Clupea harengus (Atlantic herring): 105901446
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Entry
105901446 CDS
T09045
Symbol
thbs3b
Name
(RefSeq) thrombospondin-3b
KO
K04659
thrombospondin 2/3/4/5
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04145
Phagosome
char04510
Focal adhesion
char04512
ECM-receptor interaction
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105901446 (thbs3b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
105901446 (thbs3b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
105901446 (thbs3b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
105901446 (thbs3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105901446 (thbs3b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
char04147
]
105901446 (thbs3b)
00536 Glycosaminoglycan binding proteins [BR:
char00536
]
105901446 (thbs3b)
Membrane trafficking [BR:
char04131
]
Endocytosis
Phagocytosis
Opsonins
105901446 (thbs3b)
Exosome [BR:
char04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
105901446 (thbs3b)
Exosomal proteins of colorectal cancer cells
105901446 (thbs3b)
Exosomal proteins of bladder cancer cells
105901446 (thbs3b)
Glycosaminoglycan binding proteins [BR:
char00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105901446 (thbs3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
cEGF
EGF_3
EGF
Motif
Other DBs
NCBI-GeneID:
105901446
NCBI-ProteinID:
XP_031441740
Ensembl:
ENSCHAG00000015144
UniProt:
A0A6P8H3E7
LinkDB
All DBs
Position
19:complement(19265808..19282175)
Genome browser
AA seq
964 aa
AA seq
DB search
MGIGTCRMEAHGLLAKLLILLSALQWHLTHSSEMQVIDVLKLQDSKQTATAVESMVGALG
SASDLYLTSSFRLPAKMGGMLMGVYDKKDNRKYLEMALVGKVNKLLVRYVRADGRIHTVN
LQNPTLADGRTQSIILRVGGLRRSNLFLELYVNCRLADSAQGLPLLSGLPEDVETMEFRH
GQKLYTRLQGSLDSLKLALGGSLAKAGVLIDCPFQGDSSVENAVSSDVNAILGDHTKALI
GQLIIFNQIMGELREDIREQTKEMSLIRNTILECQACGFLEPHSRCQPNPCYRDAPCMES
LEYPGYRCGPCPEGMTGNGTHCQDIDECGLAQPCFSAAGCVNTARGFSCEPCPKGSSGPV
VSGVGVEYANRHKQACVDIDECADLSSTCVPNSVCSNTMGSFTCGACKAGFTGNQTVGCF
VRRTCDFLGYNPCDVNGHCVMERGGEVSCECNVGWAGNGHICAPDSDIDGYPDESLPCID
NDKHCRADNCVNTPNSGQEDADGDGIGDQCDEDADGDGIKNVEDNCRLVPNKDQQNSDTD
SFGDACDNCPNVPNGYQLDTDNNGKGDTCDNDIDGDGIPNMLDNCPKIPNPMQTDRDGDG
VGDACDNCPEANDPLQSDSDDDLVGDVCDTDQDRDGDGHQDTRDNCPDVPNSSQVDSDND
GIGDECDEDDDNDGIPDTQPPGPDNCRLIPNPSQIDSDGNGVGDVCETDFDNDKVLDLYD
VCPENAEVTMTDFRAYQTVILDPEGEAQIDPSWVVLNQGMEIVQTMNSDPGLAVGYTAFN
GVDFEGTFHVNTVTDDDYVGFIFGYQDSSSFYVVMWKQTEQTYWQSLPFRASAEPGLQLK
AVKSSTGPGEYLRNALWHTGSTPDEVTLLWKDPRNVGWRDRTSYRWHLRHRPQVGYIRVQ
LFEGTSLVADSGVVIDTSMRGGRLGVFCFSQENIIWSNLRYRCNDTIPDEFEYHQKQMNL
RMGV
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgggaataggaacgtgcagaatggaggctcacggactgctggcaaaactgcttattttg
ctttcagcattacaatggcacctcacccactcatcagaaatgcaagtgattgacgtgctg
aagctgcaggactctaagcagacagccacggcggtggagagtatggtgggcgctctgggc
tccgcctctgacctctacctgacctccagcttccgcctgcctgccaagatgggcgggatg
ctgatgggcgtctatgacaagaaagacaacaggaagtacctggagatggccctcgtgggc
aaggtcaacaaacttctggtgcggtacgtgcgtgcagatgggagaatccacacggtgaac
ctgcagaaccccaccctggctgacgggcgcacccagtcaatcatcctgcgagtgggcggc
ctccgccggagcaacctcttcctggagctctacgtcaactgccgattggctgactcggct
cagggcttgcccttattgtctgggctgccagaggatgtggagacaatggaattccgtcac
gggcagaagttatatactagactacagggctcactagattctctcaagctggctcttggt
ggctctctggccaaagcaggagttctcattgactgtccattccagggagattcctctgtg
gagaatgcagtgagcagtgatgtaaatgctatcttaggcgatcacaccaaggctctgatt
ggtcagcttattatcttcaaccagatcatgggggaattaagggaagacattcgagaacag
accaaagagatgtccctgatcaggaatactatcctggaatgccaagcatgtggtttcctt
gagccccattcccgctgccagcccaacccctgctatagagacgcgccctgcatggagagc
ctggagtacccagggtaccgctgcgggccctgccccgagggcatgaccgggaatggcact
cactgccaggacatagacgagtgtggcctggcccagccctgcttctctgcagcggggtgt
gtgaacacagcaaggggtttctcctgtgagccgtgtcccaagggctcctccgggcctgtg
gtcagtggcgtcggcgtggagtacgccaaccgccacaagcaggcgtgtgttgacattgat
gagtgtgctgacctctccagcacatgtgtgcccaactctgtgtgctccaacacaatgggc
tcattcacgtgtggggcgtgtaaagctgggttcacgggcaaccagacggtgggctgtttc
gtgcggcggacctgcgatttcctgggctacaacccgtgcgacgtgaacggccactgcgtg
atggagcgcggcggagaagtgtcatgtgagtgtaatgtgggatgggcaggaaatggacat
atctgtgctccagactctgacatcgatgggtaccctgacgagtctctgccctgcattgac
aatgataagcactgtcgagcggataactgtgtcaacacccccaactcagggcaggaggat
gcagatggcgatggcattggcgatcagtgcgacgaggacgcagacggagacggcatcaaa
aacgttgaggataactgtcgactggtgccaaataaagaccagcagaactcagacacagac
tcctttggggatgcctgtgacaactgccccaacgtgcccaatggataccagctggacact
gacaacaatgggaagggggacacgtgtgacaatgacattgacggagatggcattcctaac
atgttagacaactgtcccaaaatccccaaccccatgcagacagatcgggatggtgacgga
gtcggagatgcttgtgataactgtccagaggccaatgatccactgcagtcagactcagat
gatgacttggtgggtgatgtatgtgacacagatcaggacagggatggtgatggtcatcag
gacaccagggacaactgcccagacgtccccaacagctcccaggtggactcagataatgat
ggcatcggtgatgagtgcgatgaagatgatgacaatgacggcattccagatacccagccc
cctggtccagataactgccgcctgattcccaaccctagtcagatagactctgatggcaat
ggagtgggtgacgtatgtgagacggacttcgacaatgacaaagtgctggacctgtacgat
gtgtgtccagagaacgctgaggtcaccatgactgacttcagggcttatcagacagtcatc
ctggacccagagggcgaagcccagatcgaccccagctgggtggtactcaaccagggcatg
gagattgtgcagaccatgaacagtgaccctgggctggctgtgggttacacagcctttaac
ggcgtcgactttgagggcacgttccacgtcaacacggtcacagacgatgactatgtcggc
ttcatcttcgggtaccaggactcgtccagcttctatgtggtgatgtggaagcagacagaa
cagacctactggcagtctctgcccttcagagcctcagcggagccgggcctgcagctcaaa
gcagtgaagtcaagcacaggccctggtgagtatctgcgtaatgcgctgtggcacactggc
agcaccccagatgaagtgaccctgctctggaaagacccccgaaatgttggctggagggac
cgcacctcctaccgctggcatctccgccaccgccctcaggtgggctacatcagagtccag
ctctttgaaggcacctcccttgtggccgactctggcgtggtgattgacacctccatgagg
ggtggccgtctgggagtcttctgcttctcacaagaaaacatcatctggtccaatctgcgc
taccgctgcaatgataccataccagatgagtttgagtaccaccagaagcaaatgaacctt
aggatgggtgtgtag
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