Clupea harengus (Atlantic herring): 105901494
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Entry
105901494 CDS
T09045
Name
(RefSeq) LOW QUALITY PROTEIN: spectrin beta chain, non-erythrocytic 4-like
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04517
IgSF CAM signaling
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
105901494
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105901494
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
char04812
]
105901494
Cytoskeleton proteins [BR:
char04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
105901494
Intermediate filaments
Intermediate filament-binding proteins
105901494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
PH
PH_9
Xre_MbcA_ParS_C
Mur_ligase_M
Motif
Other DBs
NCBI-GeneID:
105901494
NCBI-ProteinID:
XP_042560652
UniProt:
A0A8M1K9T5
LinkDB
All DBs
Position
Unknown
AA seq
1297 aa
AA seq
DB search
MLMARDGARDEAQKLHRKWMKHQAFMAELARNKEWLAKIEQEGKELIQEQPELQSVVQQK
LEEMRECWGHLESTTKAKARQLFETQNHRTPGTNPSAKALPDLDQQLSLLQEQPPTVGSA
SPSATAASLATMPTLLQPRPTFSQQLQRIQSMESQLIRGVGMTHLGGSMADVADVGAAEP
QAGLLRGVEGEERPTETRICRLIEPLKERRRILLASKEMHQVSQDLEDEIVWIQENLPLA
SSKEYGTNLQSVQQLMKTNEMLQMELQSRRERLEEVLDRAGAVAALRTPETDLVREGAEH
ARQLWEVLMVEAERRTVMLDAVFHAQQYYTQATKAESWLSGQKLQVINEERGTDEPSTLR
LLKEQLALEQIVENYAETVSFLSQQCRRMLELGHPDSEQITKQQSHIDRLYVSLKDLVEQ
RKTKLEQQYWLYQLKREVEGLEKWIADREAVASSTEMGQDLEHVTALQDKFTEFNAETRA
AGQRQMESVNKMVNEMIDCGHADAATIAEWKDGLNESWADLQELMETRTQMLAASHQLHK
FFTDCQEVLVQVEGKMRQLPEVRSCQVSTANPGTLKRLLHSFEHALQLLVTQVRQLQENA
AQLRAIYAGEKADAILAREQEVMQAWRELLVSCEGSRVQVTTXTDKVQFFALVRELSMWT
DGIMGQIGPSPDSARDVSGVETMMSQHQNLKAKMEAKSEIFSQCVEMGKMLLAARNPASE
EVKEKLDHVMAKQKDLNERWDHHWEKLQHTQQRLQDAQRILAEKAWLTSKEPMISPASPR
DMLGGAGGAGGADEVEQLIRRHEAFRKAAATWKEHFSSLRQVEKQKLKEEKSRQSVSSSL
LNRQMFPLSCLVGSSSSSSSSSTPFRQSLQDQLDIKSGPDIPQLAAHSLAQRLGASVGPY
SPVMNGSSYHSLNPQAGGAMMDNPGYHVLAQQAAQLGVDSYQGLNQQGNDGGGQLPGVEP
TGPTTPSSSSSSRGRSTRALASNTAWSCYTAGSRGTPRQPLRPQMDHLRREREYRLGRQT
SSEQEIQARLNELPMIVRQERYRRRLERQSSSEQEQASGKPSDQESGKEPTDKRPGDKRA
TMAEIVEQIQEKEAAEARGEVYRAASVLSAPCGRYDRPRARDRPKPRRRPRPKEPEETTR
RSRSAPAHAVPVIPSHTVQVEGFLYRKHEPDGKEKSPNSKSWVNLYCILANGEIAFYKDA
RHITTPYNDEPLLNLHTCTCDSTNGYKKKKNAFILKVPNSDDYIFLAKDEDEFKKWVFSI
NTSLQEHEDIVKWRTHHLLHRPDKSEAEGAFRGSRTL
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgctcatggcgcgggacggagcgagagacgaggcccagaagctgcaccgcaaatggatg
aagcaccaggccttcatggccgagctggcgcgcaacaaagagtggctggccaagatcgag
caggagggcaaggagctgatccaggagcagccggagctgcagtcggtggtgcagcagaag
ctggaggagatgcgtgagtgctggggtcacctggagagcaccaccaaggccaaggcccga
cagctcttcgagacacagaaccaccggacccccgggaccaacccgtcggccaaggccctc
ccagacttggaccagcagctgtccctgctgcaggagcagcccccgacggtgggctcagcc
tccccctcggccaccgccgcctccttggccaccatgcccaccctgctgcagcccaggccc
accttcagccagcagctccagaggatccagtccatggagtctcagctcatccgcggggtg
ggcatgactcacctggggggcagcatggcggacgtggcggacgtgggcgcggctgagccg
caggcgggcctgctgaggggggtggagggggaggagcggcccaccgagacgcgcatctgc
cgcctcatcgagccgctcaaggagaggcgacgcatcctgctggcctccaaggagatgcac
caagtcagccaagacctggaggacgagattgtgtggattcaggagaacctccctctggca
tcctccaaggaatacggaaccaacctgcagagtgtgcaacagctgatgaagacaaacgag
atgctgcagatggagctgcagagccggagagagcgattggaggaggtgttggacagggcg
ggagcagtggcggcgctgcgcacgccggagacggacctggtgcgagaaggggcggagcac
gcgcggcagctgtgggaggtgcttatggtggaggcggagcgtcgcaccgtcatgctggac
gccgtgttccacgcccagcagtactacacgcaggcgaccaaggccgagtcctggctcagt
ggacagaagctgcaggtcatcaacgaggagagaggaacggatgagcccagcaccctgcgg
ctcctgaaggagcagctcgctctggagcagatagtggagaactacgccgagacggtcagc
ttcctgtcccagcagtgccgcaggatgctggagctcggacacccagacagcgagcagatc
accaagcagcagtcccacatagaccgcctgtacgtgtcgctgaaggacctggtggagcag
cgcaagaccaagctggagcagcagtactggctgtaccagctcaagcgtgaggtggagggc
ctggagaagtggattgccgatcgggaggccgtggccagctccacagagatgggacaggac
ctggagcatgtcacggctctgcaagacaagttcacggagttcaatgcggagacgcgcgcg
gccggccagaggcagatggagtctgtcaacaagatggtgaacgagatgatcgactgcggc
cacgcggacgccgccaccatcgccgagtggaaggacggcctgaacgagtcgtgggccgac
ctgcaggagctgatggagacgcggacgcagatgctggccgcctcccaccagctgcacaag
ttcttcaccgactgccaggaggtgttggttcaggtcgaggggaagatgcgtcagctccct
gaagtgcgctcgtgtcaggtgagcacagccaaccccggcacgctgaagaggctgctgcac
tccttcgagcacgcgctccagctgctcgtcactcaggtgcggcagctacaggagaatgct
gcccagttgagggccatctatgctggggaaaaagcagatgccattctggcccgtgagcag
gaagtgatgcaagcctggagggagctgctggtgtcctgcgagggcagccgtgtgcaggtc
accacgngtacagacaaggtgcagttcttcgctctggtgcgagagctgagcatgtggaca
gatggcattatgggccagataggaccatctccggacagtgccagggacgtgtccggtgtg
gagaccatgatgtcccagcatcagaatctgaaggctaagatggaggccaagagtgaaatc
ttctcccagtgtgtggagatgggcaagatgctcctggcagcccgcaaccctgcctctgaa
gaggtaaaggagaagctggaccatgtgatggccaagcagaaggacctgaatgagcgctgg
gaccaccactgggagaaactgcagcacacgcaacagaggctccaggacgcccagaggatt
ctagctgagaaggcgtggctaacctccaaagagccaatgatcagccccgccagcccacgt
gacatgttgggcggggccggaggggcgggcggagccgatgaggtagagcagctgattcgt
cgacacgaggcgttccggaaggccgcggccacatggaaggaacacttcagctccttgcgc
caggtggagaagcagaagctgaaggaggagaagagcaggcagtctgtttcttcgtcgctg
ctcaacaggcagatgtttcctctctcctgcctggtcgggagctcgtcctcctcttcatcc
tcctccacacccttcagacagagtcttcaggaccagctcgacatcaagtctggcccagac
atcccccagctggctgcccactcgctggcccagaggctgggggcctccgtgggcccctac
agccccgtcatgaacggctcgtcctaccacagcctcaacccacaggcagggggcgctatg
atggacaatccgggctaccacgtgctggcccaacaggctgcacagctcggggtggacagc
taccaggggttgaaccaacagggtaatgatgggggtggacagctaccaggggttgaacca
acaggccccaccacgcccagcagcagcagcagcagcagggggagatccacccgggcattg
gcatcgaacacggcctggagctgctacacggcaggctccagagggaccccgcggcagccg
ctccgaccccagatggaccacctacggagggagcgcgagtacaggctgggccggcagacc
tccagtgagcaggagatccaggcgcgcctcaacgagctgcccatgatcgtgaggcaggag
cgctatcgcaggcggctcgagaggcagtcgtccagcgagcaggagcaggccagcggcaag
cccagcgatcaggagtccggcaaagagcccacggacaagagacccggggacaaacgcgcc
acaatggctgagatcgtcgagcagattcaagagaaagaggcagcagaggctcgaggggag
gtttaccgggccgccagtgttctctcggcgccctgtggccgctacgaccgcccgcgagcg
agggaccggcccaaacctcggaggaggccgaggcccaaagaaccggaagagacgacccgg
cgatctcgctcggcgcccgcccatgccgtgcccgtcatccccagccacaccgtccaggtg
gagggcttcctctaccgcaagcacgagcctgatggcaaggagaagagtcccaacagcaag
tcctgggtgaacctctactgtatccttgccaatggagagattgctttctacaaggacgcc
cgacacatcaccacgccatacaacgacgagccgctactcaacctgcacacctgcacctgt
gacagcaccaacggatacaagaagaagaaaaacgccttcatccttaaagtcccaaattca
gatgactatattttcctggctaaggatgaggatgagttcaagaagtgggtgttcagcatc
aacacctccctgcaggagcacgaggacatcgtcaagtggagaacccaccacctcctccac
agaccagacaagtcggaggcagagggagcgttccgagggagccgaaccctttga
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