Clupea harengus (Atlantic herring): 105901704
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Entry
105901704 CDS
T09045
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105901704 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105901704 (cnot3a)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105901704 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105901704 (cnot3a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
105901704
NCBI-ProteinID:
XP_012684651
Ensembl:
ENSCHAG00000012532
UniProt:
A0A6P3VYG3
LinkDB
All DBs
Position
11
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AA seq
928 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLINLVIPQLHNAANANQKEKYEADLKKEI
KKLQRLRDQIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQ
KVDPAQKEKEETEQWLTNTIDNLNMQVDQFESEVESLSVQTKKKKGDKDKQDRIEELKRL
IERHRYHIRMLETILRMLDNDSIQVDSIHKIKDDVEYYIDSSQDPDFEENEFLYDDLDLD
DIPAALMATSPQGQSNLEDEMFLQSSSTPTSTTSSSPIPPSPATGTTENSEEEKKRGRST
DSEVSQSPVKNGNPSHLSFSSSSSSSSGSTPSSVSMATVVGGVPAISSGSNLLGSFSSAV
QQNPPQSQSQQPQQQQPQQQQPQAKTPTTPVPIPSNSTPSPPSFPTLPISTTPSLPISST
PAPVTPNSLPQASSGPTSTSSLGLSLGLGLGLGKGGVTVTSSSAQMSGLGLSPMPGTMST
IAGLLSTSMPAPYAQAAAGGVGSAPGGPVGSGGGGSTVPSGGTSVVGGGGGGSGATSNGT
GSSLGLLGSSPGHVTLSGGILSLVQGQTPLQAAPQVPLSPVGTAPGSVSSLGMLGGNGGS
TGATGAGIGGNGAPARPPSVLKQNGGTSYSAVVADNTPDSTLSSSSQSQSSQPSSLSSSG
NPTLDNGPSLLSSITLPPSSPSPSFTDTTPGGGSLLNGPHSYTPNSEVIKAPEPLSSLAA
MAKRAALGTGLDGEISSLHLSERDIFSSSSAPSGPPVVPQPAVSEVNLPPSLGVCPLGPT
PLSKEQLYQQAMQEAAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVPPHHSDSIEFYQR
LSTETLFFIFYYLEGTKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYI
YFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaagaaaactccaaggtgaaatagatcgatgtttgaaaaaagttgcagag
ggtgttgagcagttcgaggacatctggcaaaagttgataaatcttgtgatccctcagtta
cataatgcagccaatgccaatcagaaggaaaagtatgaggctgacctcaagaaagaaatt
aaaaagctccagcgactacgagaccagattaagacgtgggtggcatccaacgagatcaaa
gataagaggcagttagtggagaaccgcaaacttatagagacgcaaatggagcggtttaaa
gtagtggagagggagacaaagactaaagcttactccaaggaagggctgggtttggcccag
aaagtggaccccgctcagaaggagaaggaggaaacggaacagtggctaacgaatacgata
gacaacctaaacatgcaggtggaccagtttgagagtgaagtggagtccctctctgtccag
acgaagaaaaagaagggagataaagataaacaggaccgcatagaggagctgaagaggttg
atcgagcggcaccggtaccatatccgtatgctggagaccatcctgcgaatgcttgacaat
gactcgattcaggtggattccatccataagatcaaagacgacgtggagtactacatcgac
tcctcccaggaccccgacttcgaggagaatgagttcctctatgacgacctggacctggat
gatatcccggcggcgctgatggccacttctcctcaaggtcaatccaacttggaggatgaa
atgttcctgcagtccagcagcacgcccacctccaccacctcctcctcgcccatccctcca
tcgcccgccaccggcaccacggagaactctgaagaggagaagaaaagaggacgctccacc
gacagtgaagtcagtcagtcgcctgtgaagaatgggaatccatcgcatttgtccttctcc
tcctcctcctcctcttcctctggatccaccccctcttcggtctccatggccaccgttgtc
gggggagtgccagccatctccagcggcagcaacctcctgggcagcttcagcagcgccgtg
cagcagaatcctcctcagtctcaatcccagcaaccgcagcagcagcaaccgcagcagcag
cagccgcaggccaaaacccccaccaccccagtgcccatcccctccaacagcacccctagc
ccccctagcttccccacactccccatctccaccaccccgtccctgcccatctccagtacc
cccgccccagtcacgccaaactccctgccccaggcgtcctcggggcctacctcgacctcc
agcctggggctcagcctggggctgggcttgggcttgggaaagggcggtgtgacggtgacc
agcagctcagctcaaatgtctggcctgggtctgtcgccgatgcccgggaccatgagcacc
atcgcggggctgctttccacctctatgccggcgccatatgctcaggcagctgcgggcggg
gtgggcagcgctcccggtggtccagtggggagtggcggcggcggcagcacggtcccgtcg
ggaggcacgtcagtggtcgggggaggaggcggcggctcaggggcgaccagcaacggcacg
ggctcgtctctggggctcctggggtccagcccgggacacgtaaccctcagtggaggcatc
ctgagcctggtgcagggacagacgccccttcaggcggcgccgcaggtacccctcagccct
gtggggactgccccagggtcggtgtccagtctgggcatgctggggggcaacggaggaagt
acaggggcaacaggagctggtatcgggggtaatggagctcccgccagaccacccagtgtt
ctcaaacagaatggaggcacaagttacagcgctgttgtagcggacaacacgccggactcc
accctcagcagcagcagccaatcacaaagcagccagccctcatctcttagttcctcgggc
aacccaacgctggataatggccccagtctcctgagctccatcacccttccgccctcctca
ccgtctccctcgttcacggacaccacgcctggcggtgggagtcttctcaacggcccacac
tcctacacaccaaactctgaggttatcaaggcccctgaaccgttgagttctctggccgcc
atggcaaagagagccgctctgggaacaggacttgatggagagatttcctccctacatctc
tcagagagagacatattttcaagctcctcggccccaagcggcccccctgtggtcccccag
ccggccgtctcagaggtgaacctgcctccgtcgttaggggtgtgtcccctgggtcccacc
cccctgtccaaagagcagctctaccagcaggccatgcaggaggcagcgtggacacacatg
cctcacccgtccgactccgagagaatcaggcaatacctgatgaggaacccgtgccccacc
ctgcccttccaccatcaggttcccccccaccactctgactccattgagttctaccagaga
ctgtccactgagactctcttcttcatcttctactacttggagggcacaaaagctcagtat
ttgtccgctaaagctctgaagaagcagtcgtggaggttccacaccaagtacatgatgtgg
tttcagaggcacgaggagccgaagaccatcactgacgagtttgaacagggcacatacatc
tactttgactatgagaagtggggccagcgcaagaaggagggtttcacgttcgagtaccgc
tacctggaggaccgggacctgcagtga
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