Clupea harengus (Atlantic herring): 105901883
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Entry
105901883 CDS
T09045
Symbol
taf6
Name
(RefSeq) transcription initiation factor TFIID subunit 6
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105901883 (taf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105901883 (taf6)
03036 Chromosome and associated proteins [BR:
char03036
]
105901883 (taf6)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
105901883 (taf6)
Coactivators
SAGA/TFTC/STAGA complex
105901883 (taf6)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
105901883 (taf6)
STAGA complex
105901883 (taf6)
TFTC complex
105901883 (taf6)
SAGA complex
105901883 (taf6)
SLIK complex
105901883 (taf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
CENP-S
CBFD_NFYB_HMF
Apc5_N
Motif
Other DBs
NCBI-GeneID:
105901883
NCBI-ProteinID:
XP_031423799
Ensembl:
ENSCHAG00000018957
UniProt:
A0A6P8FE40
LinkDB
All DBs
Position
5:complement(17794916..17797645)
Genome browser
AA seq
639 aa
AA seq
DB search
MADERRQKQCTVVLPTESVKVMAESAGVQLQEESCVALSDEVSYRIKEIAQDALKFMHHG
KRRKLTTSDIDHALKMKNVEPLYGFQSQEFIPFRFASGGGRELHFYEEKEVDLSDIINTP
LPRVPLDVSLKAHWLSIEGVQPAIPENPPPAPKEQQKAESTEPLKAVKPGQEEEGGIQNK
GQGATSAEAKGKKEGMMRIKPRSTHELSVEQQLYYKEITEACVGSCEAKRAEALQSIATD
PGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYLHELLPAVV
TCIVSKQLCLRPDVDNHWALRDFAARLMAQSCKTFSTTTNNIQSRITKTFTKSLLDEKTQ
WTTRYGCIAGLSELGPDVIKTLILARLSIEGARIKAVMEGPVVSNIDKIGADHVQSLLLK
HCASVIAKTRPLPDVVDQYRTDYGYLGPMLCSHVVKARAQAVLQAQQVNRTTLTITQPRP
SLTVAQSGLGGSIGTRPPSIIKVPSSLTLMSTRPGTPTQPSPPATKYIVMQTSAGAASTQ
QVITLTSAQSGSPITSTVSSTPSALQPLVKVESGGGGSVAGARPLQKYIVVSLPTSSASS
LDPKGTGGAPHVTTSPLTMDTCVKMERSESPAASTQSPH
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgagcgccgacagaagcaatgcactgttgtgctccccaccgagtcggtgaag
gtgatggcagagtcggcgggtgtgcagctgcaggaggagagctgtgtggccctgagcgat
gaagtaagttatcgtatcaaagaaatagcgcaagatgctctcaagtttatgcatcatgga
aagagacgaaaactaaccacaagcgacattgatcatgctcttaaaatgaaaaacgtagag
ccattgtacggttttcagtcacaggagttcattccgtttcgttttgcaagtggtggaggg
cgggagcttcacttctacgaagagaaagaggttgatcttagcgatataatcaacacacca
ctcccgagagtcccgcttgacgtttcgctaaaggcgcactggttaagcattgaaggggtt
cagccggctattccggagaatcctccccccgccccgaaagagcaacagaaggccgagtcc
acagaacctctcaaagctgtcaaaccgggacaagaagaagagggtggcattcagaacaag
gggcagggtgccacctctgccgaagccaagggcaagaaagagggcatgatgcgaattaag
ccccgcagcacccacgagctgtccgtggagcagcagctgtactacaaggagatcacagag
gcctgcgtgggctcgtgcgaggccaagcgagccgaggccctgcagagcatcgccacggac
cccggtctgtaccagatgctcccgcgcttcagcacgttcatctcagagggcgtgcgcgtg
aacgtggtgcagaacaacctagccctgctcatctacctgatgaggatggtcaaggcgctg
atggacaaccccaccctctacctggagaagtacctgcacgagctgctccctgccgtggtc
acctgtatcgtcagcaaacagctgtgtctgaggccggacgtggacaaccactgggccctg
agggacttcgcggccaggctcatggctcagagctgtaagaccttcagcaccaccaccaac
aacatccagtctcgcatcaccaagaccttcaccaagagcctgctggatgagaagacccag
tggaccacgcgctacggctgcatcgcgggcctctcggagctgggccccgacgtcataaag
acgctgatcctggcccggctgtccatcgagggtgcgcgcatcaaggccgtgatggagggg
cccgtcgtctcgaacatcgacaagatcggagcggaccacgtgcaaagcctgctgctgaaa
cactgcgccagcgtcatcgccaagacccggccgctgcccgacgtggtggaccagtaccgg
accgactacggctacctggggcccatgctctgctcccacgtggtgaaggcccgggcacag
gcggtgctgcaggcccagcaagtgaaccgcaccacgctcaccatcacccagccgcggccc
tccctcacagtggcccagtcgggcctggggggctccatcggcacgcgcccccccagcatc
atcaaagtgcccagctcgctcacactcatgtccacgcggccgggtacgccaacgcagccg
tcgccaccggcaaccaaatacattgtgatgcagacgagcgctggggcggcgtccacccag
caggtgatcacgttgacctcggcccagtcgggctcgcccatcaccagcaccgtctccagc
acgccctccgccctgcagcccctcgtcaaggtggagtcggggggtggggggtccgtggcg
ggggccaggccgctccagaagtacattgtggtgtctctgcccacgtcgtccgcctcctcc
ctggatcccaagggcacaggaggggccccccatgtgaccacatcccccctcaccatggat
acctgcgtcaagatggagcgctcagaatcacctgcagccagcactcagtccccgcactga
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