Clupea harengus (Atlantic herring): 105901988
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Entry
105901988 CDS
T09045
Symbol
lingo4a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 4a
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105901988 (lingo4a)
Membrane trafficking [BR:
char04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
105901988 (lingo4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
I-set
LRR_5
LRR_1
Ig_3
LRR_LRWD1
ig
LRR_6
Ig_2
V-set
LRR_9
LRR_Zer-1
LRR_RPS2
Motif
Other DBs
NCBI-GeneID:
105901988
NCBI-ProteinID:
XP_012684957
Ensembl:
ENSCHAG00000020349
LinkDB
All DBs
Position
19:complement(17740404..17751551)
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AA seq
613 aa
AA seq
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MCVEVAFWWAVCWRGLLLWAVGLVSSADSLWPCPQRCECYSEVLMVNCSGRHLASVMEGI
SGDSQRLDLSHNRLKALGRRQFSGLGQLRELDLSDNILTMIEVEAFLGLQNLLTLRMCRN
RLKIITVGVFSGLPSLRLLDISENEILVFLDYTFRELAHLQRMEVSENDLVFISQRAFVG
LANLQELNIDRCNLTVIPTDALSQLGGLVRLRLKRLSITSLPNNSFRRLGRLRELVVSHC
PWLESMAGNSLFGLNLTTLTLSHCNLSMFPYAPLHHLVYLRYLDLSYNPITSIQGNLLGD
LLRLQELHLVGGNLLQVELQAFHGLAYLRLLNVSSNQLVTLQEGAFHSVGNLEVLRLDEN
PLACDCRLLWVMRRLLRLDFDSNPPTCNAPVQVQGRAFQDFTEAEMPGLFTCRSPRILSR
RPQEVRVEEGHTVPLLCKADGDPIPSVAWLSPKHTKLSPTGRIRILPDGSLEVRYAQVHD
SGTYLCIASNAAGNDTFPVSLRVHGFPSSGRNRSASYFLDGWSLATVPTAVNGSSQQTKP
YPFDVKTLVIAVTMGFLSFLSSVAICFVFMFFWSQSKGQIKHTATIDFVPRASGGGSGGG
TSSEPSKFTMKLI
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgtggaggttgctttctggtgggcggtgtgctggagaggcctcctcctgtgggca
gtggggctagtgtcttctgcggactccctgtggccctgtccccagcgctgcgagtgctac
tcagaggtgctgatggtaaactgctcgggtcgccacctcgcatccgtgatggagggcatc
tcgggggactcccagcgtcttgacctctcgcacaaccgcctcaaggccctgggccgccgg
cagttttccgggctcgggcagctgagggagctggacttgagcgacaacatcttgaccatg
attgaggtggaggctttcttggggctccagaatttgctcaccctgcggatgtgtcgcaac
cggctgaagatcatcacggtgggggtcttctcgggactccccagtctgcggctgctggac
atcagcgagaacgagatcctcgtcttcctggactacaccttccgcgaattggcgcacctg
cagaggatggaggtgagcgagaatgacctagtgttcatctcgcagcgggccttcgtgggc
ctggccaacctgcaggagctcaacattgaccgctgcaacctcacagtcatcccaacggat
gcactgtcgcagctggggggcctggtcaggctgcggctgaaacggctgagcatcacctcc
ctgcccaacaactccttccgtcgcctgggacgcctgagagaactagtggtgtcccactgc
ccctggttggagtccatggcagggaatagcctttttggcctgaacctgaccactctaaca
ctgagccactgtaatctcagtatgtttccatacgctcctctccatcacctagtctaccta
cgctatcttgacctttcttataaccccattacctccattcaagggaacctactgggcgac
ctgctgaggctgcaggagctgcacctggtcggaggaaatctgctccaggtggagctgcag
gctttccatggccttgcttacctccgcctcctcaatgtctcctccaatcagcttgtgacg
ctccaggaaggagctttccattctgtgggcaaccttgaggtcctgcggctagacgagaac
ccgttggcgtgcgactgccgtctactctgggtaatgcgtcgcctactgcgcttggacttt
gacagcaatcccccaacctgtaatgcacccgtccaggtgcaagggagagcctttcaggac
tttactgaggcggagatgccaggcctcttcacttgccggtcgcctcgaatcttaagccgc
agaccgcaggaggttcgagtggaggagggacacactgtgccattactctgcaaggcagat
ggagaccccatcccctccgttgcctggcttagcccaaaacacaccaagctttccccaact
ggaagaatacgcattctcccagatggatctctggaggtacgctatgcccaggtgcacgac
agcggcacctacctgtgcatagcatctaatgcagcaggaaatgacaccttccctgtgagc
ctgcgtgtccacggcttcccgtcctcagggcgcaaccgctctgcctcctacttccttgat
gggtggagcctggcgaccgtgccaaccgctgtcaacggctcttcacagcagacgaagcct
taccccttcgatgtgaagacgcttgtgattgccgtgaccatgggcttcctgtcgttcctt
agctctgtggccatctgctttgtgttcatgttcttctggagccagagcaaagggcagatc
aagcacacggccacaatagacttcgtgcctcgcgcttcgggtggcggtagtggcggcggc
accagttcagaacccagcaagttcaccatgaagctcatctga
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