Clupea harengus (Atlantic herring): 105902019
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Entry
105902019 CDS
T09045
Symbol
cnot3b
Name
(RefSeq) CCR4-NOT transcription complex subunit 3b isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105902019 (cnot3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105902019 (cnot3b)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105902019 (cnot3b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105902019 (cnot3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
105902019
NCBI-ProteinID:
XP_031441592
Ensembl:
ENSCHAG00000021156
UniProt:
A0A6P8H1L6
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All DBs
Position
19:18000818..18013252
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AA seq
873 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKVIALGLHNAANANQKEKYEADLKKEIKKL
QRLRDQIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLALKVD
PAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIDELKRMIER
HRYHILMVETILRMLDNDSIQVDSIRKIKDDVEYYLDSCQDPDFEENEFLYDDLDLEEIP
AALAATSPPGNSTMEDEMFQQHSSSTPTTSTCSSPTPPSPATCLTEISEDEKKRGRSTDS
EVSQSPVKNGNPSLSSSSSSSSSSSSSSSSSASLGSSSSSSSMISMATAAACAGSSVVSG
SVQAGVIPTSGSYSSATQGHGQLQQAKISAAISIPTSAANTSSPASGLLPRPPSSGSPPP
TRSISQTPPMAPNLGGLAGPGAGSITGSGQLGFSGLPMSLSSMAGLLGGSGSAPTPYAQA
VAPSAIVNNLNANPNESPLGGPLGGSVFGTTVTSTSTGLLGAAPTSLSLGFSLAPGSTGP
QGPSLVAPTPLAGGAAPGGISGSTVALARPPSVQKQNGSTSYSAVVAESTSDAALNIVIQ
SQNSQSTSLGSSTTQPKDTGSILFRPSSPSPSYSEPKPAGSSLLNGPHSYTQATDGIKEP
LSSLKCMAERAALGSGLEGEIASLHLGGDMFPSSTAPPGAPTAPQLSLSETTIPPSLGVC
PLGPVPLSKDQVYQQAMQESAWAHMPHPSDSERIRQYLMRNPCPTLPFHHQMPPPHSDTV
EFYQRLSTETLFFIFYYLEGTKSQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFE
QGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaagagaaaacttcaaggtgaaatagatcgatgtctgaaaaaagtagcggaa
ggagtagaacagtttgaagacatctggcagaaggtaatagctttggggcttcataatgca
gctaatgccaatcagaaagagaaatatgaagctgacctcaagaaggaaatcaagaagtta
cagaggctccgtgaccagatcaaaacctgggtggcctccaacgagatcaaagataaacgg
cagctcgtggagaaccgcaagctcattgaaacgcaaatggagcgctttaaaattgtggag
cgggagacgaagacaaaggcgtactccaaagaaggcttaggtctggcgctgaaagtggac
cctgcccagaaggagaaggaggaagtgggccagtggcttacgaacacgatagacactcta
aatatgcaagtggaccagttcgagagcgaggtggagtcgctctctgtccagacacgcaag
aagaaaggagacaaagagaaacaggaccggatagacgaactgaagaggatgatcgagagg
catcgttaccacatcctcatggtggagaccatcctgcgcatgctggacaacgattccata
caggtggactccatccgcaagatcaaggacgatgtggagtactacctggactcctgccag
gaccccgactttgaggagaacgagttcctctatgatgacttggacctggaggagatcccc
gcggctctggctgccacctctcccccaggcaactccaccatggaggatgagatgttccag
cagcactccagcagcacccccaccacctccacctgctcctcgcccacgcctccgtcaccc
gccacctgcttaacggagatctctgaggacgagaagaagcgagggcgatccacggacagc
gaggtcagtcagtcaccagtgaagaatgggaacccttcactgtcctcctcctcctcctct
tcctcatcctcgtcctcatcttcgtcgtcgtctgcgtccttggggtcctcctcgtcctcc
tcctcgatgatctccatggcaaccgctgctgcttgcgctggcagcagcgtagtttccggg
agtgtccaggcgggagtcatccccacctccggcagctacagttcggccacacaggggcac
gggcaattacagcaggccaagatctccgccgccatctccataccgacctctgctgccaac
acctccagtcccgccagcggcctgctaccccgccccccttcatctggctccccccctccc
accagaagcatctctcagaccccgcccatggccccaaacttgggcgggttggcagggccg
ggggcgggctccattacaggaagtggccaactcggcttttctgggttgccgatgtccctg
agcagcatggcggggctgctaggtggctcaggttccgcccccaccccctacgcccaggcg
gtcgcccccagtgccatcgtgaacaaccttaacgcaaaccctaacgagagtcccttgggg
ggtcccttgggagggagcgtgttcgggaccaccgtgaccagcacgtccacaggcctgctg
ggcgccgctcccacctccctcagcctcggcttcagcctggcgccgggctccacaggccct
caggggccctccctggtggcccccaccccgctggcgggaggagcggccccaggagggatc
tcaggaagcacagtggcgcttgctaggcccccaagtgtccaaaagcagaacggcagcaca
agttacagtgctgtagtagctgaaagcacatcagatgccgcccttaatattgtcatccaa
tcacaaaacagccagtcaacgtccttgggctcctcaaccactcagcctaaggatacaggg
tccatcctgttccgacccagcagcccctccccctcttacagcgagcccaaaccagcaggg
agcagccttctcaatggcccccactcttacacacaggccacggatggcattaaggaacct
ctaagttctctgaagtgcatggcagaaagggcagctttgggctctggcctggaaggagag
atcgctagcctgcacctcggtggggacatgttccccagctctacagcgccccctggtgct
cccacagccccacagctgtcactctccgagacgaccatccctccctcgctgggcgtgtgc
ccgctgggcccggtacccctgtccaaagaccaggtctaccagcaggccatgcaggagtcg
gcctgggcgcatatgccacacccgtctgactccgagaggatcaggcagtacctcatgaga
aacccctgccccacgctgccgttccatcaccagatgcccccgccccactctgacacggtg
gagttctaccagagactctccaccgaaaccctcttcttcatcttctactacttagagggc
acaaaatcccagtatttggcagccaaggccctgaagaaacagtcctggaggttccacacc
aagtacatgatgtggttccagcgccacgaggaaccgaagaccatcactgacgagttcgag
cagggcacgtatatttattttgactatgaaaaatggggccagaggaagaaggaagggttc
acatttgaatacagatacctggaagaccgagacctgcagtga
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