Clupea harengus (Atlantic herring): 105902040 Help Entry 105902040         CDS       T09045                                  Symbol col1a2 Name (RefSeq) collagen alpha-2(I) chain   KO K06236   collagen type I alpha Organism char  Clupea harengus (Atlantic herring) Pathway char04510   Focal adhesion char04512   ECM-receptor interaction char04518   Integrin signaling char04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:char00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     105902040 (col1a2)    04518 Integrin signaling     105902040 (col1a2)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     105902040 (col1a2)   09142 Cell motility    04820 Cytoskeleton in muscle cells     105902040 (col1a2)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:char00536]     105902040 (col1a2) Glycosaminoglycan binding proteins [BR:char00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    105902040 (col1a2) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Motif Other DBs NCBI-GeneID:  105902040 NCBI-ProteinID:  XP_012685017 Ensembl:  ENSCHAG00000018665 UniProt:  A0A6P3W0U2 LinkDB All DBs Position 19:17600457..17621703 Genome browser AA seq 1349 aa AA seqDB search MLSFVDTRILLLLAVTSYLASCQSGAKGPRGDRGPKGPDGRPGKPGVDGPAGPPGPPGLG GNFAAQYDGAKGPEPGPGPMGLMGPRGPPGAPGAPGPQGFQGHAGEPGEPGQAGSLGARG PPGPPGKSGEDGNNGRPGKPGDRGTAGSQGARGFPGTPGLPGMKGHRGYNGIDGRKGEGG AAGAKGENGAHGTPGTPGSRGARGLSGERGRAGPSGPAGARGADGNTGPSGPAGPLGAAG PPGFPGAPGPKGEVGAAGSTGPSGAQGGRGEPGPNGAVGPAGPTGNPGANGLNGAKGAAG LPGIAGTPGFPGPRGGNGPQGPSGPSGQRGLSGDPGPSGVKGETGVKGEPGMMGAQGTPG PAGEEGKRGSTGEQGASGPAGLLGPRGASGTRGLPGLPGRAGPMGMPGARGASGPAGARG GPGDSGRAGEPGQTGARGLPGSSGSAGPQGKDGPAGPAGQDGRSGPPGPTGPRGQPGTIG FPGPKGPGGEAGKAGEKGPTGPTGLRGAPGPDGNNGPAGPVGLSGNSGEKGEGGPSGAPG FQGLPGPAGPVGEAGKGGDRGSPGDQGASGPAGVKGERGNPGPAGSVGSQGPIGARGPAG TPGTDGGKGEPGAVGPAGAPGHQGPAGMPGERGAGGTPGAKGEKGEGGFRGLEGNFGRDG ARGAPGPSGPPGPAGANGEKGESGSYGPAGPAGPRGTPGERGESGPAGPSGFAGPPGADG QAGARGEKGPGGVKGDAGAPGAAGPAGNSGPLGPSGPAGPPGARGDGGPNGLTGFPGAGG RPGPPGPAGIGGPPGLTGPSGKDGPRGGRGDAGPAGPPGENGMIGPAGLAGDKGSPGESG PAGAPGTAGPQGQLGSQGFNGLPGGRGDRGLPGMAGGVGEVGRLGPAGASGPRGPPGNMG MGGMTGPQGEAGREGNPGNDGPPGRPGAAGFKGDRGEPGSNGPSGLSGAPGPAGPAGAVG RPGSRGEAGPVGAGGPAGAAGARGSSGPAGVRGEKGTAGEKGDRGMKGLRGHPGLQGMPG PNGPPGDSGPAGSTGHSGPRGPAGPSGPSGKDGRSGTQGPVGPVGHRGPSGHVGPSGPPG TPGLPGPPGPAGGSYDVSGGFDEYAADQAALRAKDYEVDATLKSLNTQIDNLLSPEGSKK NPARTCRDIKLGHPDWSSGYYWIDPNQGCTMDAIKAYCDFTTGQTCIYPHPEGIARKNWY RSSQEKKHTWFGETINGGTEFTYNDETMSTQTMATQLAFMRLLANQAVQNITYHCKNSIA YMDAENGNLRKAVLLQGSNDVELRAEGNSRFTFNVLEDGCTRHTGQWSKTVIEYRTNKPS RLPILDIAPLDIGGADQEFGLDIGPVCFK NT seq 4050 nt NT seq  +upstreamnt  +downstreamnt atgctcagctttgtggatacccggattctgttgctgcttgcagtaacttcatacctagca tcatgccaatcgggagccaaaggacccagaggtgaccggggccctaaaggccctgatgga agacccggaaaacctggagttgacggcccagctggacctcctggaccccctggacttggc ggaaactttgctgctcagtatgatggagctaaaggacctgaacctggccctggacccatg ggtctgatgggacctagaggcccacctggagctcctggtgcacctggaccccaaggattc caaggacacgctggagagcccggagagcctggacaggccggatcccttggtgctcgtggc ccccctggacctcctggcaaatctggcgaggatggtaacaacggcagacctggcaagcct ggagatagaggaacagctggttctcagggtgctcgtggtttccctggaacccctggactc cccggaatgaagggacacagaggttacaatggaattgatggacgcaagggagagggtgga gctgctggagctaagggtgagaatggtgcccatggtacccctggaacccccggatcaaga ggtgctcgtggtctgtctggtgagagaggtcgcgctggcccctcaggcccagctggtgct cgtggtgctgatggaaacactggcccctccggccctgctggtcctctgggagcagctgga cctccaggtttccctggtgcccctggtcccaagggagaggttggagctgcaggttctact ggaccttctggagctcagggaggcagaggtgagcccggtcccaatggagctgttggccca gctggtcctactggtaaccctggtgctaatggtctgaacggagccaagggagctgctggt ctccccggaattgctggtacccccggattccccggaccaagaggaggaaacggaccccag ggaccatctggcccctctgggcagagaggcctttctggagaccccggtccctctggtgtc aagggagagactggtgtcaagggtgagcctggtatgatgggagcacagggtacccctggt cccgctggagaggagggcaagagaggctcaactggtgagcagggtgcatccggacctgct ggtcttcttggaccaagaggtgcttctggaactcgtgggcttcctggtcttcctggccgt gctggcccaatgggcatgcccggtgctcgtggtgcctctggacccgccggtgcccgtgga ggccctggagactccggccgtgctggtgagcccggtcagactggagccagaggtctcccc ggaagctctggaagcgctggaccccaaggaaaggatggccctgctggtcctgctggacaa gatggccgctccggaccccctggcccaactggacccagaggacagcccggtactattgga ttccccggacctaagggccctggtggtgaggctggcaaggctggagagaagggacccact ggacctactggtctgaggggagcccctggccctgatggtaacaatggcccagctggtccc gttggactttcaggtaattctggtgagaagggagaagggggaccctctggagctcctggt ttccagggtctgcctggtcccgctggacctgttggtgaggctggcaagggtggtgataga ggatctcctggagatcagggtgcatctggacctgctggtgtgaagggagagcgtggtaac cctggaccagctggatctgttggttctcagggacccattggtgcccgtggacctgctggt actcctggaactgatggtggaaagggtgagcctggtgctgttggacccgctggtgccccc ggacaccagggacctgctggcatgcccggtgagcgcggcgctggtggaactcctggcgcc aagggtgagaagggtgagggtggattcagaggcttggagggtaatttcggaagagatggt gctcgtggtgcccctggaccttctggaccccctggacctgctggtgccaatggtgagaag ggagagagtggatcctacggacctgctggccctgctggcccccgtggaaccccaggtgag cgtggagagtctggccccgctggcccctctggattcgctggaccccctggtgctgatggc caagctggagcaagaggagagaaaggacccggtggtgtaaagggcgatgctggagctccc ggcgctgctggacccgctggcaactctggaccccttggaccttctggacctgctggcccc cctggcgcccgtggtgatggcggtcccaatggactgactggtttccctggtgctggtggc agacctggacctcctggcccagctggtattggaggacctcccggccttactggaccctct ggaaaggatggccctcgcggaggccgtggtgacgctgggcctgctggacccccaggagag aatggcatgattggacctgctggtctcgctggagacaagggatcccctggagagtctggt cccgctggtgctcctggtaccgctggacctcagggtcagctcggatctcagggattcaat ggtcttcccggtggaagaggtgaccgtggtcttcctggtatggccggtggtgttggagag gttggcagactcggacctgctggtgcttctggacctcgtggtccccctggtaacatgggc atgggtggtatgactggtccccagggagaggctggacgtgagggtaaccctggtaacgat ggtcctcctggccgtcctggtgctgctggattcaagggtgaccgtggtgagcctggctcc aacggaccttctggcctttctggtgcccctggacccgctggacctgctggtgctgttggc agacccggaagccgtggtgaggctggacccgttggtgctggtggacccgccggtgctgct ggtgccagaggttcctctggacctgctggagtccgtggtgagaagggaactgcaggagag aagggagacagaggcatgaagggactgcgtggacaccctggtctccagggaatgcctgga cccaacggtcctcctggtgactctggtcccgctggttccactggacattctggtcccaga ggccctgctggtccctctggaccatctggtaaggacggaagatctggaactcagggccct gtgggacctgttggtcaccgtggtccttctggacatgttggaccttctggtcctcccgga actcctggtctgcctgggccccctggtcccgctggtggctcttatgatgtatctggtggc tttgacgagtacgctgctgaccaggccgccctcagggccaaggactacgaggtggacgcc actctgaagtctttgaacacccagatcgacaacctgctctctcccgagggctccaagaag aacccagcccgcacctgccgcgatatcaagctcggccacccagactggagcagcggctat tactggattgaccccaaccagggttgcaccatggatgctatcaaggcctactgcgacttc actactggacagacctgcatctatcctcaccccgagggcattgcccgcaagaactggtac agaagctcccaggagaagaagcacacctggttcggagagaccatcaatggtggtactgag ttcacttacaacgatgagaccatgagcacacagaccatggccactcagctggccttcatg cgcctcttggccaaccaggctgtccagaacatcacctaccactgcaagaacagtatcgcc tacatggatgctgagaacggcaacctgaggaaggctgtgctgttgcagggatccaacgat gtagagctgagggcagagggcaacagccgcttcactttcaacgtcttggaggatggctgc accagacacactggccaatggagcaagacagtcattgaatacagaacgaataaaccatct cgtctgcccatcctcgacattgcacctttggacattggtggcgctgatcaagagtttggt ttggacattggcccagtctgtttcaaatga

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