Clupea harengus (Atlantic herring): 105902059
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Entry
105902059 CDS
T09045
Symbol
vps50
Name
(RefSeq) LOW QUALITY PROTEIN: syndetin
KO
K23288
syndetin
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105902059 (vps50)
Membrane trafficking [BR:
char04131
]
Protein recycling
Others
EARP complex
105902059 (vps50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
105902059
NCBI-ProteinID:
XP_012685035
Ensembl:
ENSCHAG00000016211
UniProt:
A0A6P3W0W0
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All DBs
Position
19:17317696..17439806
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AA seq
991 aa
AA seq
DB search
MQKIKSLMARQGLKSPQESMADMSPVENFRIPSKEELREMREQPIDPQAEQEIIDSIEEV
YFSSDSFDMVQHELEKLPSDLNLQEIEDYRDKLKRQQAAVSKKVADLILEKQPSYVKELE
RVTSLQTNLQLAAVICTNARRQLSFSKEGFTEASLGLLANQRRRTLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDISHYTKVQLAYTLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYRDLCTHITNDSYIPCLTDLCKALWEVMLSYHRTMQWHEEHDKEEAATPDPE
GSSEDGSDEAVVGRTYVKRKLEHGLTRIWQDVQLKVKAYLLGTDMSNFKYDDFIVVLDVI
RRLMQVGEEFCGSRSEVLQESIKRQSVNYFKNYHRTRLEELRMFLENETWELCPVKSNFS
IAQLHEFKFMGQCRSPSVSPSRQASSSTSRAEESLFEQFHQGGNPFEMQIDNNEEEAEDV
LASNGYESDELEKNVYQDYDSDSDVPDELKQDYVDEQTGDLPVKSVSRETLRGQKHSDYN
LNKANAPILTNTTLNVIRLVGKYMQMMSILQPIAFDVIHCVSQLFDYYLYAVYTFFGRND
MPVTSQSAPPQGKELGAARQTTPAYWYESSGMGLISSRLRTTLNRIQESLIDMEPSGESM
GPHGPPEERREKVPSPHLSQMVVLTSSGTLYGLAQRVVATESLVFLAEQFDFLQSHLDAM
MPSAKKPFLQQFYSQTVSTASELRKPIYWIVAARAIDYEQMLLLMAGVKWDIREIMSQHN
VYVDVLLKEFEQFNKRLGEVSGQVRIPLPVSNVLWEHCIRLANRTLVEGYANVKKCSNEG
RALMQLDFQQFLTKLERLTDLRPXPDKEFVETYIKAYYLTENDMEQFIKNHREYSMKQLA
NLVNVCLGSHINKKARQKLLAAIDDIDRPKR
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaattaagtctttaatggcccgacagggtctgaaaagtccccaggaaagcatg
gcagatatgagtcctgtggagaatttcaggatccctagtaaggaggagctcagagagatg
cgggagcagcccatcgacccccaggctgagcaggagatcatcgacagcatcgaggaggtg
tacttctccagcgactccttcgacatggtgcaacacgagctagagaaactcccctcagac
ctcaacctccaggagattgaagactacagagacaaactgaagcggcagcaagcggcagtg
tccaaaaaggtcgctgatctcatcctggagaagcagccctcctatgttaaggagctggag
agagtgacgtcactgcagaccaacctgcagctggccgcagtcatctgcaccaatgccagg
aggcagctaagcttttctaaagagggcttcactgaggccagtctggggctcctggccaat
cagaggaggaggacgctgctgacaggcttactcaagtcactgaggaccataaagaccctg
caacggacggacgtgaggctcagtgagatgctagaggaggaagattatccaggtgctatc
cagttgtgtctggaatgtcaaaaggcggccagcacgttcaaacactacagctgcatcagt
gagttgaattcaaagcttcaggacacgttggagcaaatagaggagcagctggatgtggcc
ttgtctaagacctgcaagcactttgacatctcgcactacaccaaagtccagctggcctac
accctcctggggaaaacgcagacggcgatggaccagctccacatgcacttcacccaggcc
atccacaacaccgtcttccaggtggtgctgggctacgtggagctgtgcgctggcaacgcc
gacaccaagttccagaagatgcagtacagagacctctgcacgcacatcaccaacgacagc
tacatcccctgcctgactgacctttgcaaggcattgtgggaagtgatgctgagctaccac
aggaccatgcagtggcatgaggagcacgataaggaggaggcggccacccctgacccagag
ggcagcagtgaagacgggtccgatgaggcggtggtgggccgcacctacgtgaagaggaag
ctggagcatggcctcacccgcatctggcaggacgtccaactgaaagtgaaggcttacttg
ctgggaacggacatgtccaacttcaagtacgacgacttcatcgtggtcctcgatgtcatc
cgcaggctgatgcaggtgggggaggagttctgtggcagccgctccgaggtccttcaggag
tctatcaagcgtcagagcgtcaactacttcaagaactaccacaggactcgcttggaggag
ctccggatgtttctggagaatgagacgtgggaactgtgccctgtgaaatccaacttcagc
atcgcccagctccatgagttcaagttcatgggccagtgtcgttccccttccgtgtcgccc
agccgccaggcctcgtcctccacgagccgcgcagaggagtctctgtttgagcagttccac
cagggagggaacccctttgagatgcagatcgacaacaacgaggaggaggccgaagacgtg
ctggcctccaacgggtatgagtcggacgagctggaaaagaatgtgtaccaggactacgac
agcgacagcgacgttccagatgagctcaagcaggattatgtggacgagcaaacaggcgac
ctacctgtcaagagtgtttccagggagaccctacgcggccagaagcactcagactacaac
ctcaacaaagccaacgcacccatcctgacaaacaccaccctcaatgtcatacgccttgtc
ggaaagtacatgcagatgatgagcattctgcagcctatcgccttcgacgtcatccactgc
gtctcgcaactctttgactactacctttatgctgtctacactttctttggacggaacgac
atgcctgtcactagccagtctgcgccaccccaaggcaaagagctgggcgcggccaggcaa
acaaccccggcctactggtatgaatcatcaggcatgggactgatcagcagccgactgagg
accacgctcaaccgcatccaggagagcctcattgacatggagcccagcggggagagcatg
ggtccccacggcccccccgaggagcgccgggagaaggttcccagccctcacctgagccag
atggtggtgctgacgtccagtgggacgctctacggccttgcccagagggtggtggccacc
gagtcgctagtgtttctggcggaacagtttgacttcctgcagtcccaccttgatgccatg
atgccttcagccaagaagcccttcctgcagcagttctattcacagacggtgtccacagcc
agcgagctgcgcaagcccatctactggatcgtggcggccagggccatcgattacgagcag
atgctgctcctcatggctggagtgaagtgggacatcagggagatcatgtcccagcacaac
gtatatgtggatgtcctcttgaaggaatttgaacagttcaacaagcggctgggcgaggtg
tctgggcaggtgcggatccctctgcccgtctccaacgtgctgtgggaacactgcatccgt
ctggccaacaggacgctggtagagggctatgctaatgtgaagaagtgcagcaacgaggga
cgcgccctcatgcagctggacttccagcagttcctcaccaagctggagcgcctcaccgac
ctgcggcccnatcccgacaaggagttcgtggagacctacatcaaggcctactacctgacg
gagaacgacatggagcagttcatcaagaaccaccgggagtactccatgaagcagttggcc
aacctggtgaatgtgtgcctgggctctcacatcaacaagaaggcccggcagaaactcctg
gctgccattgatgacattgacagacccaagagatag
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