Clupea harengus (Atlantic herring): 105902080
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Entry
105902080 CDS
T09045
Name
(RefSeq) HMG box transcription factor BBX isoform X1
KO
K21643
HMG box transcription factor BBX
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105902080
Transcription factors [BR:
char03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
105902080
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Paralog
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Motif
Pfam:
DUF2028
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
105902080
NCBI-ProteinID:
XP_031428512
UniProt:
A0A6P8FZ69
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Position
8
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AA seq
907 aa
AA seq
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MKGGGRGKEPPVEGEVSGKRPKRKCLQWHPLLSKKALEFSEEEEEEDEEELDKGTVLCVQ
TEGKEAACGAVEEGEEDTSEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADW
WAVLEPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSSSQAVGNARKKVWSFPTN
PTKDPPVTKKVPKTDNKPQLNFAMADPTKMGGLSLLLLAGEHALTARELSSNTSPAVVTN
ATKHHGKSALFQLAEISSNTHRPPAECKQEEEESTLGSLAESSGNSVPGPAVSPKNHGHA
ASPLFQLAEISSSTSKPSVSDGKQCGQSALFQLAEMCLASEAEKRGALCPQPAGDSAPVL
PEDSSTHMDPMDQRDSPDLPPSAPSSSSSSSSSSTSPSSSASSTPTDKTPPLLSQPKNVK
KKKKDCKESLKADKTQGSVKKASKKRQSSESDLDSVIEAVAKGTWGAGETPRKKARVPVS
DKSPSPEPQHSPKKKTKPKVKKPLKAKEEALEEEEEEEEEEEVVVQKEEEEEEDGGKPQD
LPVVKEESAISPKRDGVEAPCEKTDSLVGREDMEPHSPLEALVKCEERDAADIKTPESCG
SRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRGSIRGSVSDQEGAWTDEAWTFAQTSA
SNPKKLKKSKSKDETAPGLGKLEEEFEKKFNSLPQYSPLTFDKKNTSVAKKKKPCSTILA
DQVKPTKGSSASQKKTLFHKIVSKYKHKKEKPNTLDKAIAVCQSPVPEAVQKDTPCGQVA
LEAQRAADMLVGSQKRKARKSKITHLVRTADGRLSPAEEDKAKELSQDKDEKPCTEESLC
NEEGCYAAVDRRDAPEGLPAFFSLAALAEVAAMENVHRGQRAVSLPSEGQAKDMSPQTPV
LISCADQ
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtggaggccgggggaaggagccgcctgtggagggggaggtgagtgggaaacgg
cccaagcgcaagtgtctacagtggcatcctcttctctccaagaaagccttggagttctct
gaggaggaagaggaggaggatgaggaagagttggataaagggactgtgctgtgcgtccag
actgaagggaaggaggcggcgtgtggggccgtggaggagggggaggaggacacgtcggag
cagcgcgcccgccggcccatgaatgcgttcttactcttctgcaagcgccaccgctccctg
gtgcgccaggagcacccccgactggacaaccgcggggccaccaagatcctggctgactgg
tgggcggtactggagcccaaggagaagcagaaatacacagatatggcaaaagagtacaag
gatgcctttatgaaggcaaaccctggctacaaatggtgtccaactaccaacaagcctgtc
aagagttcctctcaggcagttggcaatgcccgcaaaaaagtctggtcttttcccaccaac
cccacgaaggaccctcctgttaccaaaaaagtgcccaagactgacaacaagccacagctt
aacttcgccatggcagatcctaccaaaatgggagggctcagtctgctgctgttggctggc
gagcatgccctgactgccagagagctgtcatctaatacttcccccgctgttgtcacaaat
gctactaaacaccatggaaaatcggccctctttcagctcgctgagatttcctccaatact
catcggcctcctgcggaatgtaaacaggaggaggaggagagcactctgggaagcctcgct
gagtcctctggaaattcagtgcctggtccagcagtctcgcccaaaaaccatggtcacgcc
gcgtcccctttatttcaactcgccgagatttcctccagtacttccaagccctcagtttct
gatggaaagcagtgtggtcagtcagctctcttccagcttgctgagatgtgtttggcctct
gaggcggagaagagaggggccttgtgtccccagcctgcaggtgactctgctcccgttctc
cccgaggacagttccacacacatggatcccatggatcaaagagactcccccgacctgcct
ccatcagcaccttcctcctcctcctcctcctcctcctcctctacgtctccttcctcctcg
gcctcctccacccctaccgacaaaacaccgccactcctcagccagcccaagaatgtgaaa
aagaaaaagaaggactgcaaagaatctctcaaggccgacaagactcaaggttcggtgaag
aaagcctcgaagaagcgccagtcctcggagtctgacttggacagtgtcattgaagccgtg
gccaaagggacctggggcgcgggggagacgcccaggaagaaggcccgcgtccccgtcagt
gacaagagcccttcccccgagccacagcactcgccaaaaaagaagacgaagcctaaagtg
aagaaaccactcaaagcaaaagaagaggcgttggaggaggaggaggaggaggaagaggag
gaggaggtggtggtgcaaaaagaagaagaggaagaggaggatggcggcaagccacaagat
ctgcctgtggtgaaggaggagagtgcaatatcccccaagagggacggtgttgaggcaccc
tgcgagaagacggactccctcgtggggagggaggacatggagccccacagccctctggag
gccctggtcaagtgtgaggagagagacgccgccgacatcaagacaccggagagctgtggc
tccaggaagtctgagcgcagctgcaagggggccctgtacaagacgctggtgtcggagggg
atgctaacgtcactgagagccaacgtggatagaggaaaaagaggctctatccgagggagt
gtgtcggatcaggagggggcgtggaccgacgaggcctggacctttgctcagactagtgcg
agcaaccccaagaagctgaagaagtctaaatctaaagatgagaccgcgccaggtctagga
aaactagaagaggagtttgagaagaagttcaacagcttgccacagtatagccctttgaca
tttgacaaaaagaacacctctgtcgccaagaagaagaaaccatgttccaccattctcgct
gatcaagtcaagcctactaagggttcatctgcatctcagaaaaaaaccttattccacaag
atcgttagcaaatacaagcacaaaaaggagaagcccaataccttggataaagccatagcc
gtgtgccagtcccctgtgcccgaggccgtgcagaaggacacgccgtgtggccaggtggcg
ctggaagcccagcgggcagccgacatgctggtgggcagtcagaagaggaaggcgaggaag
agtaagatcacccacctggtgcgcaccgccgacggcaggctgtccccagcagaggaagac
aaagccaaggagttgtcccaggacaaggatgaaaagccatgtactgaagagtctttatgc
aatgaagagggctgctacgctgcagtagacaggagggatgcacctgaaggcctgcccgcc
ttcttcagcctggccgccctcgctgaagtagcagccatggagaacgtgcacagaggtcag
cgtgctgtcagcttgcccagtgagggccaagccaaggacatgtcgccccagacccctgtg
ctgatctcctgtgctgaccagtga
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