Clupea harengus (Atlantic herring): 105902171
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Entry
105902171 CDS
T09045
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X2
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105902171 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105902171 (patl1)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105902171 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
105902171 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
105902171
NCBI-ProteinID:
XP_012685168
Ensembl:
ENSCHAG00000015834
UniProt:
A0A6P3VZ71
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Position
22
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AA seq
766 aa
AA seq
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MFRFQSLDEDCTLEEEEEGQVEGDNDIDQFNDDTFGAGAVDDDWQEEHARLAQLDEGVRD
LLAEGDVSSASLPPPAGSVPHPSSLPRPSASTLPPPGLEERGGGDLAESLTRLLLGSDPA
IAGVGAAESDRSCFPSMSHAQGLSASLQASLLSYQQHQHILHRGPPPLPQMNSHSIWENS
MGFGPVSISPGLVTHMEDSPLMSIIKEVGLPKRPPTMRAEDCLDLSERVPPPRSSSPIIG
SPPVRAVPIGTPPKQPLSHAFNQQIHCPTAVHVQAPVQHRYPPPFPERLSPNTLLNIANS
PLCRPPFPAGVGPILSQIQRAQLLNSQMGPFPRGGPGPPPMLPGGSVGFRPFFSQPPPRL
GPHPAPPNHNPIRHNTTHLHPQHRRMLTQRMQSRGDRGGRGGDRRSRDPYSNLMTQKEKD
WVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRLERDKDSIRKEPTTKLITPQVAKFEQTY
RPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWNKRRQILYTVEKVYSLL
LEVQDFEKKFLQTPEEQREALLDQHKTHTLQLYNSLKEKEWDDRVSDEQCLMIMSVRKGK
RLMSRLLPFLPPPQAAAVLMGIARNLPGLAKKDKQDQVLCWLVEPVAIVIQSMSSSALTD
LLQELQGSEGQLPRVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVTRE
LLKVPSSSLSPPLFTPPNLLSLFSRYVDRQRLELLQEKLQITALSR
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgttccgatttcagtctctggatgaagattgtaccctggaggaggaagaggaagggcag
gtagagggggacaatgacatcgaccagttcaatgatgacacattcggagccggtgctgtt
gatgatgactggcaggaggagcatgctcgcctggcgcagctagacgagggggtgcgggat
ttgctggctgagggcgatgtgtctagtgcctcactaccacctccggcggggagtgttccg
cacccctcctctttgccccgtccctccgcttccacactgcctccccccggcctggaagag
cggggtggtggggatctggctgaatccttgactcgtctactcctggggtcagatcctgcc
attgctggagtgggcgctgcagaatcagaccgatcatgcttcccatccatgtctcacgcc
cagggtctttccgcttcgctccaggcttcgctgctgagctaccagcaacaccaacacatc
ctgcacagagggccaccacccttgccacagatgaattctcacagtatatgggagaacagc
atgggatttggacctgtgagtatttctcctggactggtcactcacatggaggacagccca
ctgatgtccatcattaaggaggtggggctaccaaagagaccccctacaatgagggctgaa
gattgtttagacctatcagagagggtgccaccaccccgctcctcttcaccgatcattggt
agccctcctgtgagggcggtgcccatcggaacccctcccaaacagccactaagtcatgcc
ttcaaccagcagatccattgccctactgcggttcatgtacaagctccagtccagcaccgc
tacccccctcccttccctgagcgcctctctcctaacacccttctcaacatcgctaactct
cctctgtgtcggcctccatttcctgctggggtgggaccgattctctctcagatccagcgg
gcccaactgctcaactctcagatgggcccatttcctcgaggtggccctggtcccccgccc
atgttgccaggtgggagtgtgggttttcgaccttttttcagccagcctcctcccagattg
ggaccacaccctgcccctcctaaccacaaccccatccggcacaacactacacacctccac
cctcagcatcgtaggatgcttacgcagaggatgcagagccggggtgaccgtggtggcaga
ggaggggatcggcgcagcagggacccctacagtaacctgatgactcagaaggagaaggac
tgggtggcgcgcatccagatgatgcagctccagagcactgatccttacctggatgactac
tactatcagaactattatgagaagatggagaagcgtttggagagagacaaagacagtatc
aggaaggagcccaccaccaaacttatcacccctcaggtggccaaatttgagcagacgtac
cgcccagttcagtttgctggctcccttggaaagctcaccgtctcaagtgtgaataatccc
aggaagatgattgatgcagtggtgacaactcgcactgatgatgaggagaagagggaaaag
caggtgtggaacaagagacggcagattctctacactgtggaaaaggtgtacagtctgttg
ctggaagtccaggactttgaaaagaaattcctgcaaacgcccgaggagcagagagaggcc
ctgttggaccagcacaagacccacacactgcagctttacaactccctcaaagaaaaggag
tgggacgacagagtgagtgatgaacagtgcctcatgatcatgtcagtgagaaaggggaaa
cgcctcatgtccaggctcctccccttcctgcccccaccacaggctgctgctgttctcatg
ggcattgctcgaaatctgccaggcctggcaaagaaagacaagcaggatcaggtcctttgc
tggttggttgagccagttgctatagtaatccagtccatgtccagttccgccctcacagac
ctcctgcaagagttgcaaggcagtgagggtcagctccccagagtactgcaaaataagttt
ggtgtgacactgctctacctaattttgagtgaaggcgagagaatgcagagctcggatccc
aattgtcaactaatggatgataaccgatggacagagttggtattctctgtgacccgagag
ctgttgaaagtcccctcctcatcgctctcccctcctctcttcacgcctcccaaccttctc
tctctcttctctcgctacgtagaccgccagaggctggagctgttacaggagaaattacag
atcactgcattatccaggtag
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