KEGG   Clupea harengus (Atlantic herring): 105902225
Entry
105902225         CDS       T09045                                 
Symbol
kdm5bb
Name
(RefSeq) lysine-specific demethylase 5B-B isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
char  Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:char00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:char01009]
    105902225 (kdm5bb)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:char03036]
    105902225 (kdm5bb)
Enzymes [BR:char01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     105902225 (kdm5bb)
Protein phosphatases and associated proteins [BR:char01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     105902225 (kdm5bb)
Chromosome and associated proteins [BR:char03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    105902225 (kdm5bb)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD ARID zf-C5HC2 JmjN
Other DBs
NCBI-GeneID: 105902225
NCBI-ProteinID: XP_031422689
Ensembl: ENSCHAG00000002807
UniProt: A0A6P8FBE4
LinkDB
Position
4:24247130..24285640
AA seq 1575 aa
MTQPRPDEFKPPPECPVFEPSWEEFADPFAFINKIRPIAEKTGICKVRPPPNWQPPFACD
VDRLHFTPRIQRLNELEAQTRVKLNFLDQIAKFWELQGCSLKIPHVERKILDLYHLNKLV
ADEGGFDIVCRDRRWTKIALQMGFAPGKAVGSHLRAHYERILYPYNLFQTGNNLLAPELA
SKLMRYTDDRELDQCVQKPVMTPDLSEKEYKLHDAPQRTGVNLQLSDSSPPSRRAKRMDQ
GNSAPTADELPIKLSGCVKTEPGEVCENRPNLRRRMGSLVAKPEPAEREAPILVKPEPLE
PKLISESLMDKSKGRYRKTPPMLSVVDLYVCLVCGSGTNEDKLLLCDGCDDSYHTFCLIP
PLCDVPRGDWRCPKCLAQECGKPPEAFGFEQARRDYSLRAFGEMADNFKSDYFNMPVHMV
PTELVEKEFWRLVSTIEEDVTVEYGADIASKEFGSGFPIRNGRLKIAPADEKYLSCGWNL
NNMAMMNPSVLTHVTADICGMTLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYG
APGYAAEQLEGVMRKLAPELFELQPDLLHQLVTIMNPNTLMSHGVPIYRTNQCAGEFVIT
FPRAYHSGFNQGFNFAEAVNFCTVDWMALGRQCVDHYRLLNRYCVFSHDEMICNMASKAP
GLDVVLASAVHRDMASMLREEKELRERVRKMGVVQSEVFQYDLLADDERQCVKCRTTCFL
SALTCPCRPGVQVCLHHAGDLCSCPFSKYTLKYRFTLDDLYPMMKAVKKRAEPYNEWAAV
VTDVLEAKLDKKRALSVFRSLIEQSERQEFPDSDLLRELRVATLDAEKCSSVAQQLLNGK
RQTRLRSGGVKTQNQLTVEEVRSFVRQLYNLPCSLPQAPLLKELLNRIEDFQQHSEAVLS
APLTAECVCELEGLLEASAQLDVALPELPCLRSRLEQARWLREVQQAHAHTHTHTHSPPA
AHTHARARGLTLDAMRRLIDQGVGLSPNPALERAMARLQELLTVSETWEEKAHSLLRDRP
MHSVEELRECVREVETIPAHLPNCLLLQDTLRKAKDWLQEAEAIQQRGRIPVLDSLSDLI
TRGRSLPVHLEPLARLEGLVAEVMTWKESAAKTFLLKSSTFSLLEVLCPRCEVGVSSPKR
RAKKEKKKAGLDTLSDVEKALSESTASAAAMQTLEAVRAREMECVSALRASNESKLLPAG
DCDHLRVCVCQRAPAGAMLQCELCRDAFHSVCVRGAEPQGQGEGPWLCPQCQRSQRPPMD
RILPLLAALQRTRVRLPEGDALRFLIERTVAWQRRARQVSASCSDPALLLPAADKALQGH
TPDWNRTSPAQTPFYIEQRCIPLQGLKPELEALMVEGLLLQASLPETQQLYRVLLNGPIS
PHSSGHGNASPRVTAHGDAPKQSHCQGRSPQKEECVGVCEASSLSPAQECVGVCEADRKP
KRRVLPVERVDRAERAERVHPEALCQLLTPRRKRARISREHRRHRQAASASASPSARSDL
SSDPCDLSDPCRSDDSEDEALLCPAEHCQQPEGDEVFWVQCDGSCNQWFHMMCVGVTAEL
AEKEDYVCVSCVGRK
NT seq 4728 nt   +upstreamnt  +downstreamnt
atgacccagcctcggccggacgagttcaagccgcctccggagtgcccagtcttcgaacca
agctgggaggaatttgcggatccctttgcatttatcaataagattcgacccatagctgag
aaaactggcatctgcaaagtccgaccgcctccgaattggcagcctcccttcgcctgtgat
gtcgacagactccacttcaccccccgcatacagaggctcaacgagctggaggcccagact
cgggtcaaacttaacttcctggaccagatcgccaagttctgggagcttcagggctgttcg
ctcaaaatcccccatgtcgagcgcaagattctggacctctaccacctcaacaagctggtg
gctgatgaggggggctttgacatcgtgtgccgggaccggcgctggaccaagatcgccctg
cagatgggcttcgctcctgggaaggcagtgggctcccacctcagggcccactacgagcgc
atcctctacccatacaacctcttccagactgggaacaacctactggcccccgagctcgca
tccaaactgatgcgatacacagacgaccgcgagctggaccagtgtgtgcagaagccagtg
atgacccctgacctcagtgagaaggagtacaagctgcacgacgccccccagaggacggga
gtgaacctgcagctgtctgactcctcccccccctcacgccgggccaagcgcatggaccag
ggaaactccgcccccaccgcagatgagctgccaatcaaactgtcagggtgtgtgaagacg
gaaccaggagaggtgtgtgagaaccggccaaacctcaggagacgcatgggctcactggtg
gccaagcctgagccagcagagagagaggcccccatcctggtgaagcccgagcctctggag
cccaaactcatcagcgagtctctgatggacaagagcaagggccgctaccgcaagacccca
cctatgctcagtgtggtggacctgtacgtgtgtctagtgtgtggcagtggaaccaacgaa
gacaagctgttgctatgcgatggttgtgacgacagctatcacaccttctgtctgatcccg
cccctttgtgatgtacccagaggagactggaggtgtcccaagtgtctggcacaggagtgt
gggaagcctccggaggcctttggctttgaacaggctcgtagggattactctctcagagcc
ttcggtgagatggccgacaacttcaaatcagattacttcaatatgccagtccatatggtg
cccactgagctggtagagaaggagttctggcgtctggtgagcaccatagaagaagacgtg
acggtggagtacggagcagacatcgcctccaaggagttcggcagcggcttccccatcagg
aacggccgtctgaagatcgcccccgccgacgagaagtacctgagctgcggctggaacctg
aacaacatggcgatgatgaacccgtcggtgctgacccacgtgaccgcagacatctgtggc
atgactctgccctggctctacgtgggcatgtgcttctcctccttctgctggcacatcgag
gaccactggagctactccatcaactacctgcactggggcgagccgaagacgtggtatggg
gctccaggctatgcagcggagcagttggagggcgtgatgaggaagctggcccccgaactc
tttgaattgcagccagacctgctgcaccagctggtcaccatcatgaaccccaacacactg
atgagccacggagtaccgatctatcggaccaatcagtgtgcaggagagtttgtcatcacc
ttccccagagcctatcacagcggcttcaatcagggcttcaacttcgcagaggccgtcaac
ttctgcaccgtggactggatggcgctggggcgtcagtgtgtggaccactaccgcctcctg
aaccgctactgtgtgttctcccacgatgagatgatctgcaacatggcctccaaagccccg
gggctggacgtggtgctggcctccgccgtgcacagggacatggcctccatgctccgggag
gagaaggagctgcgagagcgcgtccgcaagatgggagtggtgcagagcgaggtgtttcag
tatgacctcctggcggatgatgagcgtcagtgtgtgaagtgtcgcacgacctgcttcctg
tccgctctcacctgcccgtgccgcccgggggtacaggtgtgtctccaccacgccggggac
ctctgctcctgccccttctccaagtacacactcaagtaccgcttcacactggatgacttg
tacccaatgatgaaggccgtgaagaagagggcggagccttataatgagtgggcggccgtt
gtcactgatgtcctggaggccaaacttgacaagaagcgtgctctgtccgtgttccgctcg
ctgattgagcagtctgagcggcaggagtttcctgacagtgacctgctgcgtgagctgcgt
gtggccacactcgacgccgagaagtgctcctccgtcgcccagcagctgctcaacggcaag
agacaaactaggcttcggtctggaggtgttaagacgcagaaccagctgactgtagaggaa
gtgaggtcatttgtcaggcagctctacaaccttccctgcagcctgccacaggccccactg
ctgaaggagctgctgaaccggatcgaggacttccagcagcacagtgaggcggtgctgagc
gccccgctgacggcggagtgtgtgtgtgagctggagggtctgctggaggccagcgctcag
ctggacgtggccctgcccgagctgccctgcctccgcagccgtctggagcaggcgcgctgg
ctgagggaggtgcagcaggcccacgcacacacacacacacacacacactcgccgcccgca
gcgcacacacacgcccgggcccgcgggctcaccctggacgccatgcggcggctgatcgac
caaggcgtggggctgagcccaaacccggcgctggagagggccatggcccggctgcaggag
ctgctcaccgtctccgagacctgggaggagaaggcccacagcctgctcagagaccggccc
atgcactctgtagaggagctgagggagtgtgtgagggaggtggagactatcccagcacac
ctgcctaactgcctgctcctgcaggacacactccgcaaagccaaggactggctgcaggag
gccgaggctatacagcagagaggtcgtatccccgtgttggactctctatcggacctcatc
acgagggggcggtctctcccagtacacctggagcccctggcacgccttgagggcctagtc
gcagaggtcatgacctggaaggaatccgccgctaagaccttcctgcttaagagctccacc
ttcagtctcctggaggtgttgtgtcctcgctgtgaggtgggcgtgagctcgccgaagcgc
agagctaagaaagagaagaagaaggcgggacttgacactctgagtgatgtagagaaggcc
ctatcagagagcaccgcctccgccgcagcaatgcagactctggaggcggtgcgggcgcgg
gagatggagtgtgtgtcggcgctgcgggcgtctaacgagtccaagctgctgccggcgggc
gactgtgaccacctgcgtgtgtgtgtgtgccagcgcgccccggcgggcgccatgctgcag
tgtgagttgtgtcgcgacgccttccacagcgtgtgcgtgcggggggcggagcctcagggg
cagggggaggggccctggctgtgtcctcagtgccagcgctcacagcgccccccgatggac
aggatcctgccgctgctggccgcgctgcagcgcacacgcgtacgcctgcccgagggcgat
gccctgcgcttcctcatcgagaggaccgtcgcctggcaacgacgtgcacgccaggtctcc
gcctcctgctcagatcccgccctgctgcttcctgccgcagacaaggcgctgcagggacac
actcctgactggaacaggaccagcccagcacagacaccattctacatcgagcagcgatgt
atccctctgcagggtctcaagccagagctagaggctctgatggtggagggtcttcttctg
caggcgtctctccctgagactcagcagctgtaccgcgtccttctcaacggccccatctca
ccacacagcagtggccacggcaacgcgtcgccgcgggtaaccgcccatggcgacgcaccc
aaacagtcccactgtcagggaagaagcccacagaaagaggagtgtgtgggtgtgtgtgaa
gcttcgtctctgtctccggcccaggagtgtgtgggtgtgtgtgaggcggaccgtaagccc
aagcggcgtgtgctgccggtggagcgggtggatcgggcggagcgggcagagcgggtgcac
cccgaggctctgtgccagctgctgaccccgcgacgtaagcgtgcccgcatcagccgtgag
caccgacgccaccgccaggctgcctctgcctccgcatcgccctccgcccgctctgacctc
tcctctgacccctgcgacctctccgacccctgccgctccgacgactccgaggacgaggcc
ctcctctgcccagccgagcactgccagcagcccgagggggacgaggtgttctgggtgcag
tgtgacggcagctgtaatcagtggttccacatgatgtgtgtgggcgtgacggcggaactg
gcggagaaggaggactacgtgtgtgtgagctgcgtcggccgcaaatga

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