Clupea harengus (Atlantic herring): 105902458
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Entry
105902458 CDS
T09045
Symbol
cux2a
Name
(RefSeq) homeobox protein cut-like 1 isoform X1
KO
K09313
homeobox protein cut-like
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105902458 (cux2a)
Transcription factors [BR:
char03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain CUT
105902458 (cux2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CUT
Homeodomain
Homeobox_KN
HTH_50
Motif
Other DBs
NCBI-GeneID:
105902458
NCBI-ProteinID:
XP_031433569
Ensembl:
ENSCHAG00000012465
UniProt:
A0A6P8G313
LinkDB
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Position
12:complement(21719334..21738802)
Genome browser
AA seq
1408 aa
AA seq
DB search
MFCIADNHAHLKGCRLFPKMAADARSMFQYRKNLDTQLQDKAEAALLEVYKQLVDASGVF
AYTGPTPMLEKRQMKLQESFPSDSTPGKVLDRQLDGQLNGSACLDPPQGTEERMVPTQQP
PASPSSPADPSARGHRDQCQTERSPGQTDMTFSLRLAKAEERIRSLQSALTSSQSEVLNL
QRQYDEERTSRAKEAVDLMVANIEKANQKVEAAVIGADSVSEDVDRGCISAQNGSSPVER
VEMERAGLELVIADRDREILRLREEVRRLQLMLQEAQESTANQIAQLEGQLARKIESIQT
LQVKLKSQQDYDQLKTELRIFRAMKEASLNGRISQLCSPLSERLAPLMSVRPLAESPAVS
VTREMEVKREAQTPVGFPVAVDTPPSGSPRPPVSSQGCSPRTLPLSPLSQSPDRSLLSPF
IKPEPSPPGPFPEALYAAKAALSEGSRSLSRASHCSEGGGSGDGGLTGEPWEGGGGSARE
EGEGDGELMGTSEIALQVKEQLLRHNIGQRVFGHYVLGLSQGSVSEILARPKPWSKLTVK
GKEPFLKMKHFLSNEQNILALRNIQVRQRGNITPRIRTPETGSDDAIRNILERAKKEIQG
GGEEISTTRSSVCSTGPSGRVSAGRGSSSGMGDSDNTIKAILEQARREMVAQQKHQALRE
MAVCHWGTSGSGSACSPPASTEPRPPAVKQEGASVSVSHPQLLQQTPLSVISPKDFVQNI
IRKVKSEIGDAGSYQGSHWSATSSTSHPLTSVSPSLCSTASSSSPFSAFAGQSSSWMDPW
SRQPFNRERGQEDALSSEGEGGHMVKVKVETEEEEPDEGVEHLSPCSAYVTRPPKPIVPP
LTLDQYDAFTHQQLDTVLLTRQVKDRLAQKGICQRIFGEKVLGLSQGSVSDILSRPKSWS
KLTQKGREPFIRMQLWMQGQLGQNLSSSAPNNPSLEQDPAMVSSSPSSDEERAGPLSEPG
SLSLESSKENQQPPQQQDGQVYLGPFELPHPALSALDVQQLAILSPELDTLNITRRVKEV
LNSNNLGQRLFGEMILGLTQGSVSDLLARPKPWNKLSLKGREPFIRMQLWLKDPQNVEKL
REMKKMDNRAYLKRAHHLLSSGFDRDSPANTSDIGPCLESSHPGQAKKTRVVLATQEKEA
LKRAYQLEPYPSQSTIERLAAQLGLRISTVINWFHNYRSRMRRDSEEGEMLKADALKPLS
GDLQETSQMLCSQSPSKGDCSFMPVGLVTVKQEPWESREEEEEEEEPSETHAHPTKYIST
GVQFAGRLEMKEDCPRSPRPCSGVKQEVSGDCGETSTSPPKPDTLRGTPPMHHASENQTF
SQSSEGTELKANAAASSPTHILPPLSPLPSCITPTPLTSEGAEQTSVQQSPVAGHSTQQR
SAKKANLDIIIHRLERAANREEMLEWEF
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgttttgtatagccgacaaccatgcccacttgaaaggttgtaggctattccccaagatg
gccgctgatgccagatcaatgtttcaatataggaaaaatttggacacacaattgcaggac
aaggcagaagctgccctcttggaggtgtacaaacagctagttgatgcctcaggtgtattt
gcttacacagggcccacccccatgttggagaagagacagatgaaacttcaagaatccttc
ccctcagatagcacaccaggcaaagttctcgacaggcagctggatggacagctcaacggg
tcagcttgtctagatcctccgcagggcacagaggagaggatggtgcccactcagcagccc
ccagcctccccctcctcacccgctgacccgagcgcccgcgggcacagggatcaatgccag
acggagcgaagcccgggtcaaacagacatgacgttttctctcaggctggccaaagcggag
gagaggatccgatcactccagtcagccttgacgtcttctcaaagtgaggttctcaacctg
cagcggcagtatgacgaagagaggacctctagagcgaaggaagcggtcgacctgatggtt
gctaatattgaaaaggccaaccagaaagtggaggcagcagtgattggagcagacagtgtg
agtgaagacgtggacagaggctgcatctctgcccaaaatggctccagtccagtggagaga
gttgaaatggagagggcggggctggagctggtcatagctgaccgggacagggagatcctc
cgcctgagggaggaggtgcggaggctccagctgatgttacaggaagcccaggagagcacg
gccaatcagatcgcacaacttgagggccaactggctcgtaagattgagagcatacagacg
cttcaggtgaaactaaaatcccagcaggactacgatcagctcaaaacagagctcagaatc
ttccgagccatgaaagaagcctcgctcaacggccgcatttctcagctgtgctcccccctc
tccgagagactggctccattgatgtctgtgaggcccttagcagagagtcctgccgtctct
gtcacaagagagatggaggtaaagagggaggcgcagacgccagtggggttcccagtcgcc
gtggacacgcctccgtccggcagcccgcgacctcccgtctcctcccagggctgttcgccc
cgcacgctccctctcagccccctctcgcagtcccctgacaggtccctgctgtcccccttc
atcaaaccagagcccagcccgcccgggcccttccccgaggccctctacgccgccaaggcc
gccctgtccgagggcagccggagcctgtcgcgtgccagccactgctccgagggcggcggg
agcggggatggaggccttacgggagagccgtgggagggcggaggagggagcgcgagggaa
gaaggggaaggggatggcgagctgatggggacgtcggagatcgccctgcaggtgaaggag
cagctgctgaggcacaacattgggcagcgggtgttcggccactacgtgctggggctctct
caagggtcggtcagcgagatcctggcccggcccaagccctggagcaagctcacggtcaag
ggcaaggagcccttcctgaagatgaagcacttcctgtccaacgaacagaacattctagca
cttcgcaacattcaggtccgacagagaggaaatattactccgcgcattcgcactccagag
acgggctcagatgacgccatcaggaacattttggaacgggctaaaaaggagatccaggga
ggaggtgaagagatctccaccactagaagctccgtgtgtagcaccggccccagtgggagg
gtctctgctgggcgaggcagcagcagtgggatgggcgacagcgacaacaccatcaaggcc
atcctggagcaggcgcgccgcgagatggtggcccagcagaagcatcaggccttgcgggag
atggcggtgtgtcactggggcaccagcggcagcggcagcgcctgcagccccccggcctct
acggagccccggcccccggcggtgaagcaagagggggccagcgtcagcgtgtcccacccc
cagctcctccagcagacacccctcagcgtgatctcccccaaagactttgtccagaacatc
atacgcaaagtcaagagtgaaatcggcgatgctggttcctaccagggcagtcactggtcg
gccacatccagcacgtcacatccgttgacctctgtgtcgccatcgctgtgctccaccgct
tcgtcctcttcccccttctccgcctttgcgggtcagagttcatcgtggatggacccttgg
tcacgtcagccgttcaatagagagcggggccaagaggatgccctgtccagcgagggtgaa
ggtgggcacatggtgaaggtcaaggtggagaccgaggaggaagaaccggacgagggagtg
gagcatctttcgccgtgttctgcctatgtgacccgcccaccaaagcccatcgtccctcct
ctgaccctggatcagtatgacgccttcacgcaccagcagctggacacagtcctactgacc
cggcaggtcaaagacaggctggcgcagaagggcatctgccaacgcatctttggagaaaag
gtcctgggcctgtctcaaggtagtgtaagtgacatcttgtcccggcctaagtcctggagc
aagctgacccagaagggcagagagccgttcatccgcatgcagctctggatgcagggtcag
ctggggcaaaacctgagctccagtgccccaaacaacccctccctcgagcaggacccagca
atggtgagctcctcccccagctcagatgaggagcgggctggcccgctgagtgagccgggc
agcctgagcctggagagcagcaaggagaaccagcagcctccacaacagcaggacgggcag
gtgtacctgggtccctttgagctgccccaccctgccctgtcggcgctggacgtccagcag
ctagccatcttgtcccccgagctggacacgctcaacatcaccaggagggtgaaggaggtc
ctcaacagcaataacctcgggcagcgtctgtttggggagatgatcctgggcctgacccag
ggctcggtatcggacctgctagctcggcctaaaccctggaacaagctgagcctcaagggc
agggagcccttcatccgcatgcagctgtggctcaaagacccccagaatgttgagaagctg
cgagaaatgaagaagatggacaacagagcatacctcaaacgggcccatcatttactgagc
tcgggctttgacagagactcccctgccaacacctcagacataggtccctgtctggagtct
tctcacccaggccaagccaagaagaccagagtggtgcttgccacccaggagaaggaggca
ctgaagagggcttaccagctggagccgtacccctcccaaagcactatagagagactcgcc
gcccagctcggcctcaggatcagtacagtaatcaattggttccataactacaggtctcgt
atgagaagagattcggaagaaggagagatgcttaaagcagacgccttgaaaccgctctcc
ggtgacctccaggagacgagtcagatgctttgtagccaaagtccctctaagggtgactgc
tctttcatgcctgtaggcttggtgactgtcaaacaggaaccctgggaatcaagggaggaa
gaggaggaagaggaggaaccatcagagacccacgcgcacccaaccaaatacatctccaca
ggcgtgcagtttgctggcagactggaaatgaaggaagattgtcctcggtctccacggcca
tgttcaggagtcaagcaggaggtcagtggagattgtggagaaacatcaactagcccgcca
aaaccagacacacttcgtggaactccgccaatgcatcatgcatcagagaaccagactttt
tctcaaagctctgaggggactgaacttaaagccaatgccgctgcctcatcgccaacacac
attctacctccgctctccccacttccctcatgcatcacaccaacaccacttacctctgaa
ggtgctgagcagaccagcgtccagcaaagccctgtggctggccacagcacccagcagcgc
agcgccaagaaggccaatctggacatcatcatccatcggctggagcgggcagccaacagg
gaggaaatgctggagtgggagttttag
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integrated database retrieval system
