Clupea harengus (Atlantic herring): 105902469 Help Entry 105902469         CDS       T09045                                  Name (RefSeq) collagen alpha-1(XXVII) chain A   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism char  Clupea harengus (Atlantic herring) Pathway char04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:char00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     105902469  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:char00536]     105902469 Glycosaminoglycan binding proteins [BR:char00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    105902469 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Motif Other DBs NCBI-GeneID:  105902469 NCBI-ProteinID:  XP_031433679 UniProt:  A0A6P8G396 LinkDB All DBs Position 12:complement(20787438..20839879) Genome browser AA seq 1702 aa AA seqDB search MNLATRRRDCRTSRLDPKRALLLCTLLYCSCHLGLAQVLSEDVDVLQRLGLRGGQGSRSV PPGVISVPTGVILTSRARLAAPFLSLLPSASKHTPATTHMDLAVLVSLRLHRRNSAFLFS ILSGSRLQLGVELSPGQLTVQAGAPSQTNTQVRSQPPPQPSVAPNVVSFPLDLHDGRLHS LALSVNGRRVTLQGGCGQKTQTALFPTEPAPLDPRGSFQLGRGGPRLTGVALEGALCQLE LVNWERTADVRFCSTMRPECKEDPGISNHTHPLLPLPPLSDEALPWKPPRITGTAATHLV SPSPRGPTQRTQTVAPTRTQTPRTPRPTDKKTSSKPTTRTKPNSAKPTAPKSIPPKPSKK PIPTKPAATKTTSKRPTPPKPTFKRPIATKLTPKKPTAQAVSAFKPTPKKVPVRRPTASI LPSKPSKRPEDAVPTPRTPAKKYLRMAVTPSTPRVTLESTPTLAMDQFTYDPDLSEVLLL PGPPGLKGEPGFPGSPGPPGKTGPSGKQGPRGPPGPHGKPGRPGPPGLKGHKGDPGLSPG KSPNGDKGDLGIMGPVGLPGQAGRRGQKGHPGPVGLPGDQGLQGPDGLPGAKGYPGRQGL PGPIGPPGPKGARGFIGIPGLFGLPGADGERGIPGPPGKRGTMGRPGFPGDFGERGPPGL DGEPGTLGLPGPPGVRGLVGDMGPAGPMGLTGPFGLKGVFGNVGPIGLKGDKGDVGLPGK QGEIGFSGDKGIQGIPGLPGLQGKPGLQGRPGERGPDGIPGPQGPEGFPGDIGPPGHNGL EGPKGKLGARGLPGPKGGAGLLGDEGPIGPPGPPGHEGLMGRKGFSGKTGPEGDKGEIGI TGKVGPMGEKGLIGFIGPVGETGLAGEKGDRGEMGGPGPPGEKGSTGHPGPPGEAGLLGP PGMPGGAGSRGPIGGRGPKGRRGPRGPDGLVGERGVEGKTGPDGPPGKIGFPGNDGKFGE PGEKGLKGFPGTPGSSGPPGDKGIAGDPGPPGVPGTVGPLGDIGLKGPSGKVGDSGLSGE PGEKGSFGPPGNVGESGLVGPRGEPGLEGEAGASGPDGLKGEKGDMGPEGSQGERGEAGL KGKEGPPGDPGHTGIRGPEGKPGKMGERGKAGPKGTKGHQGHLGETGPMGKIGANGAVGP KGSRGTIGHVGAPGRMGQQGEPGIPGYEGHQGPIGPLGPPGPKGEKGEHGDDGKVEGPPG PPGHRGRVGDRGDRGESGDPGYKGQLGVDGERGRSGAPGLPGHPGPRGPQGPKGSKGELG QKGKQGLIGDRGSRGSTGVVGLPGPRGVVGREGQEGPPGEDGPPGKDGSRGVLGDQGDDG AFGPSGKAGGRGKVGVPGLPGDQGAFGPKGERGLHGHAGPMGKRGHKGGMGLPGAQGSKG AKGQTGDAGEPGYPGILGMFGPQGPPGDFGPKGLRGPKGPQGSVGRIGAMGPMGAIGPIG NPGIKGDKGNLGEYGVRGPRGASGPRGLPGPPGLPGVPPSYRQNDLAALQVFIDSHTPHK RETGVMLDEAVGLLETLHDLLSAVHSLQNPEGSQRNPARLCRDLHHCQHSLTHGTYWIDP NLGCSSDSIQVTCKNGHTCLKPITAAKLEISVGRVQLNFLHLLSLGAEQSLTVHCLNISV WSPARGLPPSQRSVRFRGWEGASLDPIVLEDTCWQRDGQWHQVRFLFRVTDPILLPITHI ANLPEATPASRYHLEVGPVCFL NT seq 5109 nt NT seq  +upstreamnt  +downstreamnt atgaatttagcgacccgaaggagagattgcagaacctctcgactcgacccaaagagagca ttactcctctgtactcttctctactgtagttgtcacctgggacttgctcaagtactctct gaagatgtggatgtgctacagagactgggattgcgtggaggtcaggggtcacgttccgtt cctccaggggttatctccgtaccaacgggggtcatccttacatcacgggctcgcctggca gcaccattcctctccctcctcccctccgccagcaaacacacaccggccacgacacacatg gacttggcagtgctcgtgagcctgcgcctgcaccgccgaaactctgccttcctcttctcc atcctgtctggttcccggctgcagctgggcgttgagttgtcacccggtcagctgactgtc caagctggcgcaccctcacagactaacactcaggtgcgctcgcagccgccgcctcagccc agcgtggcccccaacgtggtcagcttcccgctggaccttcacgacgggcgcttgcattcc ctggcgctatctgttaacggccgacgagtgacgctgcaggggggctgcggacagaagact cagaccgcgctgtttccaaccgagcccgcgccccttgacccccgcgggagcttccagctc ggccgaggcggcccccggctcactggcgtggccctggaaggggcgctgtgtcagctagag ctggtgaactgggagcggacggccgatgttcggttctgcagcaccatgcgccccgagtgc aaggaggaccccggcatttctaaccacacccaccccctgcttcctctgcctccactctcg gatgaggcgttaccatggaaacccccacgcatcacaggaaccgccgccacccatttggtg tcaccatcaccccgtggacccacgcaaaggacacagactgtagcccctacacggactcaa acaccccggacacccagaccaactgacaagaagacctcttccaaacccacaacgagaacc aagcccaactctgctaagccgaccgccccgaaatcaataccccccaagccctccaagaaa ccaattcccactaaaccagcagccaccaagaccacctccaaaaggccaacccctccaaag cccacctttaagaggcctatagccacaaagctcactcctaaaaagcctactgcccaagcc gtgtctgcctttaagccgacccctaagaaagttccagtgaggaggcccactgcctccata ctcccctccaaaccctccaagcggccggaagacgcagtgccaaccccgcgtacccctgcc aagaagtacctccgcatggctgtgaccccatctacacccagagtcaccttggaatccacc cccaccttggccatggaccagttcacctatgaccctgatctctcagaggtcctcctgctg cctggacccccagggttgaagggagagcctggatttccgggatctccgggaccaccgggt aagacaggcccttcaggaaagcaaggaccaagggggcctccaggacctcacggcaaaccg ggacgacctggtcccccagggctcaagggtcataaaggagacccagggctttctccagga aaatcacccaatggggacaaaggagacctgggcatcatggggcctgtgggattgcctggt caggccgggcggagggggcagaagggccatccaggtccagtgggccttccaggagatcaa ggtttacagggtcctgatggattgcctggggccaaaggttatcctggcaggcagggtttg cctgggcctataggacctccaggaccaaaaggcgcacggggttttattgggatcccaggg ctatttggtttacctggagctgacggagagcgaggtattcctggaccaccggggaagaga gggacgatgggtaggccggggtttccaggtgattttggtgaaagaggaccaccaggactt gacggggaaccaggcacactggggcttccagggcctcccggagtgcgtggactagttggt gatatgggacctgcaggccctatggggttgacagggcccttcggcttgaagggggtgttt gggaacgtgggccctatcggactgaaaggtgataagggggatgttggccttcctggcaag caaggagagattgggttctcaggagacaagggtattcaaggtataccagggttgcccggt ctgcaaggaaaaccaggccttcagggtagaccaggcgaaagaggtcctgacgggatacct ggtccccaagggccagagggttttcctggagacatcggaccacctggacacaacggcctt gagggtccaaagggaaagcttggagcaaggggattacctgggcctaaaggaggtgctgga ctgctgggcgatgaggggccaataggcccaccaggaccaccaggacatgaggggcttatg ggcagaaagggtttctctgggaaaaccgggcctgaaggagacaagggtgaaataggaatc acaggaaaggttggacccatgggtgaaaaaggcctgattgggttcatcggaccagttggc gagacgggcctagcgggagagaagggggaccgtggagagatgggggggccaggaccacca ggagagaaaggatccacaggtcatccaggacctccgggggaggcggggcttctgggaccc ccagggatgccaggtggcgctggctctcgaggacccattggtggcagaggacccaaaggc agacggggaccccgggggcctgatgggctggtgggggagcgcggtgtggagggcaagacg ggccctgatggaccaccagggaagattggtttcccgggcaatgatgggaagtttggggag cctggagaaaaggggcttaagggttttccgggcaccccaggctcctccggtcctccagga gacaagggcatagcaggagacccggggcctccaggtgtaccaggaaccgttggacccctt ggggatattgggctgaagggtccctctggcaaggttggggattcaggactgtcaggcgag ccgggagagaaggggtcttttggaccaccaggaaatgttggcgaatcgggcctggttggc cccagaggagagccaggattagaaggagaagctggggcttctgggcctgatggactcaag ggagagaaaggggatatgggtccagaggggtctcaaggggagagaggcgaggctggactc aaggggaaagaaggaccaccgggagaccctggacacactggcattagaggacctgaaggt aaacctgggaagatgggtgagcgaggcaaagcaggccctaaggggactaaaggacaccaa ggccatctgggtgaaacaggaccgatggggaagataggagcaaatggagctgtaggcccc aaaggatcgagaggaaccatcggccatgtgggtgcaccagggcgaatgggccagcagggg gagccaggcataccaggctatgagggtcatcaaggtccaataggcccacttggacctcca ggacccaaaggtgaaaagggggagcatggggatgatgggaaggttgaggggcctcctggt cctcccggacacagaggacgtgtgggagacagaggagacagaggggaatctggtgatcca ggatacaaaggccagctaggtgttgatggagaacgaggcagatcgggtgctcctggatta cctggccaccctggacctcgcggaccacaagggcctaaagggtctaaaggagaattgggt caaaaaggcaagcagggtctaataggagatagaggaagccggggatcaacgggtgttgtg ggtttgcctgggcctcgtggtgtggtgggtcgtgagggacaggaaggccctccaggtgaa gatggacctccagggaaggatgggagcagaggcgtactgggggaccaaggcgatgatggg gcatttggcccttctggtaaagctggtggccgcggtaaagtgggtgtgccagggctgcct ggagaccagggtgcttttggaccaaagggtgagcgtggtctacacggacatgccggccca atggggaagagaggccataagggagggatgggtctgcctggagcgcagggcagcaaagga gccaagggtcagactggggacgctggagagcctggatatccagggatccttggaatgttt ggaccccagggacctcctggggactttggtccaaagggcctccgaggacctaaagggcca cagggcagcgtggggagaattggggcaatggggcctatgggagccataggcccaattggt aatcctggtataaaaggagataagggaaacctgggagaatatggtgtgcgagggccaagg ggtgcatccggacctcgtggactacctggacctccaggtcttcctggtgtgcccccttct tataggcagaatgaccttgcagctctgcaggtgttcatcgattcacacactccacataag agagagacaggagtgatgttggatgaggcggtgggtctgctggaaaccctgcacgacctg ctgtctgctgtgcacagcctgcagaacccagagggcagccagcgcaacccagcgcgcctc tgcagagacctacaccactgccaacactcactcacccacggcacttactggatcgatcca aatttaggctgctcctccgactccatacaggttacatgcaagaatggacacacttgcctc aaaccaatcacagcagccaagttggagataagtgtggggcgtgtccagttgaacttcctc cacctgctgagtctgggggcggagcagagtctgacggtccactgcttgaatatcagtgtg tggagcccagcccgtggcctcccgccttcccagaggtctgtgcgcttcagagggtgggaa ggggcgtcgctcgatcccatcgtgctggaggacacatgctggcagagggatgggcagtgg catcaagtgcgtttcctgttccgagtgacagatcccatcctgctacccatcactcacatt gccaatctaccggaggccacacctgcctcccgctaccacctggaggtcggacctgtgtgc ttcctctag

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