KEGG   Clupea harengus (Atlantic herring): 105902516
Entry
105902516         CDS       T09045                                 
Symbol
ubap2a
Name
(RefSeq) LOW QUALITY PROTEIN: ubiquitin-associated protein 2a
  KO
K26545  ubiquitin-associated protein 2
Organism
char  Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:char00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:char04121]
    105902516 (ubap2a)
   03400 DNA repair and recombination proteins [BR:char03400]
    105902516 (ubap2a)
Ubiquitin system [BR:char04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Multi subunit type E3 associated proteins
    105902516 (ubap2a)
DNA repair and recombination proteins [BR:char03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     105902516 (ubap2a)
SSDB
Motif
Pfam: UBAP2-Lig UBA_RAD5A UBA_4 GIP1_N DUF1510
Other DBs
NCBI-GeneID: 105902516
NCBI-ProteinID: XP_042565369
Ensembl: ENSCHAG00000027193
UniProt: A0A8M1KUT7
LinkDB
Position
12:complement(19994450..20009326)
AA seq 1188 aa
LGSDRARGSRDKVLPATTQNSQPQKQPQATAEQIRLAQMIYDKNDADFEDKVKQLMEVTG
KNQDECMVALHDSNEDVNRAINFLLEGTSDTTASWETVGRRRWERTVARQRARRTERTGT
GAESGRAAADAEGPARGAGEAVAAAREVRAEENGVEPAPVERGADHGRRGRGRVAGTRGR
GRAPGTSRFTAQGMGTFNPADYTTEAGRAAAQAQAENWEAGANDATDGPVAWRSPLEDWA
AEDWSEDLSETKVFTASCAPTTENHVTAGQSLDLASLLQKPAGREEVGGGLKAPSSAPLG
HSLVFTNSHHHATRNGGTTPGTASYAHATLSSVLGSGFGELGGPKLGQSAGAQILEQLKG
PGLGPLPTQPPSSSGANHTPVVGGLGGTAGPAAPPPSSTMVSSSWDVKPPVTQASVAMPS
QFSREFKMQPEPSLVLSQLAQRQTPNALSHASPLPLARQQPSPPPASSAPAGLLEPFPKL
PEPLLLQQQQQMHDAQAAANAQQQRQMKTQKRRIPPSSKIPSSAVEMPGSADVLGLNVQF
GALDFGSESAMPDFSAPSEVGTTTNSSSTISSDAARDTPAVSQTQSSLYSKPISEALTNP
VPLLMPMSSADIIYSSASVPMPSLAPSLSIASAAPMSSVTSSSSASSAASSFDCGVPPHS
RLAFSQSKEAPGPVTNGYNGVRTSAALDSTSASSTPKPESPSLGSTGSGPPSAPSAHLPP
SMPPSTTLSSLAAEHPSASLPPLSSHVSSVHSALPTSSSHTHSSVDSVNSLAPPASVAYS
GAQTAGLPISSGGSMGMVSNSAMLHGSGVLGLTANGTTNNANTVSAMRAAPLLSSSTSKA
PPNLSQGVPPLLPNQYIMGPGGLLPAYPIYGYEDLHMLQSRLPMDYYGITFPGPAAALSS
RDGGLANNPYSGEVTKFGRGDSTSPAPPSSLSAGHAGQAPQAQQQGQSGSGNAPQTQGHH
AAQQAFLNPALPPGYSYTGLPYYPGMPGVPNAFQYAPTMFVPPASAKQHGMGLSNAPQAT
PFQQPSSYGQHTFSSGYDDLTQGPAGADYSKGYSSSNQTQAKSAASGPGKGVSVTSSNSG
VPDISGTVYNKTQSFDKQGFHAGTPPPFSLPSALGGTGQLNPGGAPGYAPAPFLHILPPH
QQPHSQLLHHHLSQDTQGGLNQRSQSSSMQQKTQVNKSSYGSSPYWGN
NT seq 3567 nt   +upstreamnt  +downstreamnt
ttaggcagcgaccgagcccggggctctcgggacaaggtgctgcccgcaaccacacagaac
tctcagccacagaaacagccacaggcaaccgccgaacagatccgacttgcccagatgatc
tacgataagaacgatgcagacttcgaagacaaagtcaaacagctcatggaggtgacgggg
aagaaccaggatgagtgcatggtggcgctgcacgacagcaacgaggacgtgaaccgagcc
atcaacttcctgctggaagggacctcggatacgaccgcctcttgggagaccgtgggaaga
agaaggtgggaaaggacagtggcccgtcagagagcaaggagaaccgagagaaccgggaca
ggcgcggagagcgggagggcagccgcggacgcggagggcccagcaagaggggccggggag
gcagtcgcagccgcccgggaggtgcgggcagaggagaatggggtggaacctgctcctgtg
gaaagaggcgctgaccatgggcgcagaggcagaggacgggttgctggaaccaggggaaga
ggcagagccccagggaccagccggtttacagcacagggaatggggaccttcaaccctgcg
gactacaccacagaggcaggcagggctgccgcacaggcacaggcggagaactgggaggca
ggggccaatgacgccacagatggaccagtggcttggaggagccctctggaggactgggcc
gcagaagactggagtgaggacctctccgagaccaaagtgttcaccgcctcttgtgcaccg
actacggagaaccacgtcacagctggccaaagtctggacctggcctctctgcttcagaag
ccggccggcagggaggaagtgggtgggggcctgaaggctccctcgtccgctcccttgggg
cacagcctggtgttcaccaactcccaccaccacgccacccgcaacgggggcaccacaccg
ggcactgccagctacgcacacgccaccctgtcgtctgtgcttggttctggtttcggcgag
ctagggggccctaagctgggccagtctgccggtgctcagatcctggagcagctgaaggga
ccaggcctggggccgctgcccacgcagccgcccagcagttcaggggccaaccacacccct
gtggtggggggcctggggggaacggcggggccggccgcaccccctccctcatccaccatg
gtttcgtcgtcatgggacgtgaagccacctgtgacgcaggcctccgtggctatgccgtca
cagttcagccgtgagtttaagatgcagccggagccgtctctggtgctgagccagctggca
cagaggcagacccccaacgccctgagccacgccagccccctccccctggcccggcagcag
cccagccccccgccggcctcctccgcccccgccggcctcctggagcccttccccaagctg
ccggagcccttgctgctgcagcagcagcaacagatgcatgacgcccaggctgcggccaac
gcacaacagcagaggcagatgaagacgcagaaacgcaggatacctcccagctccaagatc
ccctcgtctgcagtggagatgccgggctcagcagacgtgttggggctgaatgtgcagttt
ggggcgctggactttggctcggagtcggccatgccggacttcagcgcgccttcagaggtc
ggcaccaccaccaacagcagcagcaccatcagcagcgacgcagccagagacactcctgct
gtcagtcaaacacagagcagcctctactccaaacctatcagtgaggctctgaccaacccg
gttcccctgctgatgcctatgtcctccgcggacatcatctactcctcggcctccgtgccc
atgcccagcctggcgccctcgctcagcatcgccagcgcggcccccatgtcctccgtcacg
tcctcctcctccgcctcctcggcggccagcagctttgactgtggagtgccccctcactca
cggctcgccttctcgcagagcaaagaagcccccggccctgtgacgaatggatataatggt
gtgaggacatcagctgctcttgactccacatccgcgtcctcaacccccaaaccggagtcg
ccctctctgggcagcactggcagtgggcccccctccgctccctcggcccacctgcccccc
tccatgccccccagcacaacactctccagcctggcagctgagcacccctccgccagcctc
ccccctctcagcagtcatgtaagcagcgtccactctgcacttcctaccagctcttctcac
acacactccagtgtggacagcgtgaactcgctggctccccctgcctctgtggcatactca
ggggcgcagacagcaggcctgcccatcagcagcggggggtccatgggcatggtcagcaac
agcgccatgctccacggctccggggtgctgggcctcacggccaatgggaccacaaacaac
gccaacacggtgtcggccatgagggccgcaccactgctgtcctcctctaccagtaaagca
cctcctaacctgtctcagggggttcctcctcttctgcccaaccagtacatcatgggtccc
ggaggcctcctgccagcatacccgatttatggatatgaagacttgcacatgctgcagtct
agattacccatggactactacggaatcacattcccaggccctgcggcagctctctccagc
agagacggcggccttgccaacaacccttactcaggtgaagtcacaaaatttgggcgtggc
gactccacctctccggctccccccagctcactgtctgcgggccacgcgggccaggctccc
caggctcagcagcagggccagagcggcagtggcaacgccccccagacgcaggggcaccac
gcggcacagcaggccttcctcaacccggcgctgcccccgggctacagctacacgggcctg
ccctactaccccgggatgcccggtgtgcccaacgccttccagtacgcccccaccatgttt
gtgccgccggcctcggccaagcagcacggcatgggcctgagcaacgcccctcaagccacg
ccattccagcagcctagcagctacggccagcacacctttagctcagggtatgacgacctg
acgcagggtccggcaggagcagactacagcaaaggctacagcagctccaaccagacacag
gccaaatctgctgcctccggcccggggaaaggtgtctctgtgacgtctagtaactccggt
gtgccagatatcagtggaacagtttacaataagacccagtcgtttgataagcagggtttc
catgctggtacccctccccccttctccctgccgtcagctctggggggcactgggcagctc
aaccctgggggggctccgggttacgcacccgcccccttcctgcacatcctccccccgcat
cagcagcctcactcccagctcctgcatcaccacctgagccaggacacacagggtggtctg
aaccagaggagccagtccagcagcatgcagcagaagacacaggtcaacaagtccagttat
ggcagctccccttactggggcaactaa

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