Clupea harengus (Atlantic herring): 105902560
Help
Entry
105902560 CDS
T09045
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X2
KO
K08524
retinoid X receptor alpha
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03320
PPAR signaling pathway
char04148
Efferocytosis
char04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
105902560 (rxraa)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
105902560 (rxraa)
03320 PPAR signaling pathway
105902560 (rxraa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105902560 (rxraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
char03310
]
105902560 (rxraa)
Transcription factors [BR:
char03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
105902560 (rxraa)
Nuclear receptors [BR:
char03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
105902560 (rxraa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
105902560
NCBI-ProteinID:
XP_012685639
Ensembl:
ENSCHAG00000026104
UniProt:
A0A6P3W1I9
LinkDB
All DBs
Position
12:18991028..19107536
Genome browser
AA seq
513 aa
AA seq
DB search
METKPFLSLGFLKPQCSLAPPPQRGRSDGCTCFSGMCHLHQRRLSTDWPIFNKLADNRRS
YPTGAVTQLQDSSGHLNSPSSHRSMHPALLSPSSMGPSGLHSSISGLGSPMNGLGSHFSV
ISSPMHQHPMSSPGMGYSSSISPQLNSPMNSVSSSEDIKPPVGLNGVMKVPAQPCNNPLS
LTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKDCTIDKRQRNRCQY
CRYQKCLAMGMKREAVQEERQRAKDSKENEVESTSSANEDMPVEKILEAEVAVEPKTETY
IETNLGMPSDSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL
IASFSHRSITVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGC
LRAIVLFNPDSKGLSNPSEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIG
LKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaacctttcttgtcattggggttcctgaagcctcagtgctcgctggcgccc
cccccacagagaggccgctccgatggttgcacctgcttcagcgggatgtgccacctccac
cagcgccgcctgtccaccgactggccgatttttaacaaactggccgataaccgacgtagc
taccctacaggagctgtcacacaactgcaagattcatcgggccacttgaactcgccctcg
tcccaccggtccatgcacccggcgctgctcagcccgtcctccatgggcccgtcggggctg
cactcgtccatcagcggcctgggctcgcccatgaacggcctgggctcccacttctccgtc
atcagctcccccatgcaccagcaccccatgagctcgcccggcatgggctacagctccagc
atcagcccgcagctgaactccccgatgaactcagtgagcagctcagaggacatcaagcct
ccggtaggcctgaacggtgtgatgaaggtgccagcccagccctgcaacaaccccctgtcc
ctcaccaaacacatatgtgccatctgcggtgaccgctcctcaggcaaacactacggcgtg
tacagctgtgaggggtgtaaaggcttcttcaagcggaccgtacgcaaagacctgacctac
acgtgccgcgacagcaaggactgcaccatcgacaagcgccagcgcaaccgctgccagtac
tgccgctaccagaagtgcctggccatgggcatgaaaagagaagccgtccaggaggagcgt
caacgggccaaggacagcaaagagaacgaggtggagtccaccagcagcgccaacgaagac
atgcccgtggagaagattctggaagccgaggtggccgtggagcccaagacggagacctac
atcgagaccaacctcggcatgccctccgactcgcccaacgaccccgtgacaaacatctgc
caggccgcagacaagcagctgttcaccctggtggagtgggccaagaggatcccgcacttc
tccgagctgccactcgacgaccaggtcatcctgctgagagcaggctggaacgagctcctg
atcgcctccttctcacaccgctccatcacggtgaaggacggcatcctcctggccacaggg
ctccacgtgcaccgcaacagcgcccacagcgccggggtgggcgccatctttgacagggtg
ttgacagagctggtgtccaagatgcgggacatgcagatggacaagactgagctgggctgc
ctgcgagccatcgtcctcttcaacccagactctaagggcctgtcgaaccccagcgaggtg
gaggctcttcgggagaaggtctacgcctccctggaggcctactgcaagcagaagtacccg
gagcagcccggaaggttcgctaaattgcttttgcgtctgccggccctgcgctccatcggc
ctcaagtgtctggagcacctgttcttcttcaagctcatcggtgacacgcccattgatacc
ttcctcatggagatgctggaggcgccacaccaaatgacataa
DBGET
integrated database retrieval system
