Clupea harengus (Atlantic herring): 105902562
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Entry
105902562 CDS
T09045
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X3
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105902562 (rc3h2)
04121 Ubiquitin system [BR:
char04121
]
105902562 (rc3h2)
Transcription factors [BR:
char03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
105902562 (rc3h2)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105902562 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-CCCH
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
zf-CCCH_UNK
zf-C3HC4_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
105902562
NCBI-ProteinID:
XP_012685654
UniProt:
A0A6P3W1J5
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Position
12:16462807..16492097
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AA seq
1093 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDGSGHKPISLGCSHTVCKTCLHKLHRKACPFDQTAISTD
IDLLPVNRALLQLVGAQVPDGPAVSLGSPVDSEHYEVSRACVEELALYLKPISGGKGVAT
LSPSALSRPMQRKLVTLVNCQLVEEEGRIRAVRAGRSLGERAVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLVHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNSLRLHLELLANI
DHNTDAAPPTWEELQSVMLAVKVVVHGLVEFIQNFSKKSHETPQPQPNSKYKTSMCRDLR
QQGGCPRGANCTFAHTQDELEKYRMRNKKLGGASRPFLLSQGGMGKGPSCKGGISVMESS
LGGLKGPEKDIQAPDGPLPPQLIPRGGDSLEDLKRVLPNGANVHSQSTSVNIEQKTVSPP
KTPVSQTQALLLSPHATAHETGGGTSSKPAHFLLRGHPELYYQDQRSPTCDVPPYQPASN
YYPPTGPPSKPCVARFLRSVNVAESSFPPASPYADQQSLLATRDRLGPQFGQQQAAACSS
LSPGHGHGHGHAHSVYAPVYDSRRTWRPQLYQREDGRSNSLPPEVLHSPACQPPPTRERY
NSLDSPYCGSADHRAALHRTHRPAVCSQDSYSRVPLGYEDLLHRKQEQWAHHHGNVSRPS
QSSPVFAVDFCAEHADGVGGACVSCKYRAEESLAHYSPWSCGSISPFDSEQYASSTYSSC
SQHMEVESGGGKRWLHMFEPYRRLKEEDPIIPFGEGPIISKWGAISRASRTGYHTTDPVQ
ATASQGGVSTTPINFRDYSPHIGHGDYRWGPRGSDSSSHSSFLESDQLGVMELQARRPSL
IGGEKLEGGRFHPEASPNCAESEPDRDIELELSALDLEDNELHQNTIQEPLEVRVPAHSA
LLSPPSTEPQKRSPDGMDHHLLKKMAFRKALSPGGLGSGRLGIGKLTMKTGPPTLADSHR
PSTAGPEVLLNGS
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgcaggcggcccagtggactgagttcctgtcctgccccatctgctacaatgag
tttgacggcagtggccacaagcccatcagcctgggctgctcgcacaccgtctgcaagacg
tgtctgcacaagctccaccgcaaggcctgccccttcgatcagaccgctatcagcactgac
atagatctgctgcctgtcaacagagccctcctgcagctagtgggtgcccaggtccctgat
gggccggctgtgtccttgggcagtccagtggacagtgagcactatgaggtgtccagggca
tgtgtggaggaactggctctctacctgaaacccatcagtggaggtaaaggcgtggcgacc
ctcagcccgagcgcgctcagtcggcccatgcagaggaagctggtgacgctggtcaactgt
cagctggtggaggaggaggggcgcatccgggcagtgcgtgcgggccgctccctgggcgaa
agggcggtcactgagctcatcctccagcaccagaacccccagcaactctcagctaatctg
tgggccgccgtccgcgcccgagggtgccagttcctcggaccagccatgcaggaggacgct
ttgaagctggttctgctggccctggaggacggctcggctctgtcacggaaggtcctggtg
ctgtttgtggtccagaagttggaggctcgcttcccccaggcctccaagaccagcattggc
cacgtggtgcagctcctctaccgggcctcctgttttaaggtgaccaagcgggatgaggac
tcgtcgctcatgcagctgaaggaggagttccgcacctatgaggcgctccgccgcgagcac
gacgcccagatcgtccacatcgccatggaggcggggctccgcatctcgcctgagcagtgg
tcctcgctcctttatggagatcttgtccacaagtcccacatgcagtccatcatcgacaag
ctccagtcacccgagtcatttgcaaagagtgtccaggagctgactattgtgctgcagaga
actggggaccctgccaacctgaacagcctgagactacacctggagctcctggccaacatc
gaccacaacacagatgcagcaccaccaacctgggaggagttgcagagtgtgatgttggct
gtgaaggtagtggtccatggcctggtggagttcatccagaacttcagcaagaagagccac
gagacgccccagccacagcctaacagcaagtacaagaccagcatgtgcagagacctgcgg
cagcaaggaggctgcccacggggtgccaactgcacttttgcccatactcaggacgaatta
gagaagtacagaatgaggaataagaaactcggtggggcctcccgccccttcctgctctcc
cagggggggatgggaaagggccccagctgtaagggggggatctcagtgatggagtcctcc
ttggggggtctgaagggccctgaaaaagacatccaggcccctgatggccccttgcccccg
cagctcatcccccgcggtggagactcactggaggacctgaagagggtgcttcccaatggt
gccaatgtgcactcacagtccacctctgttaatatagagcagaagactgtttcgccccca
aagacgcccgttagccagactcaagccttacttctgtctccccacgccactgcccacgag
acgggcgggggaacctcttccaaaccagcccacttcctgctgaggggacaccctgagctc
tactaccaggaccagcgctccccaacgtgtgacgtgcccccctaccagccagccagtaat
tactacccccccactggccccccctccaaaccctgtgtggctcgtttcctacgctctgtc
aacgtcgcagagtcctccttccccccagcgtcaccgtacgccgatcagcagtctctgttg
gctacacgagaccgtctgggccctcagtttggccagcagcaggcggcggcatgcagctcc
ctgagccccggtcacgggcacggccatgggcacgctcacagcgtctatgcgccggtctat
gacagccgtcggacatggcggccgcagctgtaccagcgggaggacggccggagcaattcg
ctgccgccagaggtgctgcactcgcccgcttgtcaacctccccccaccagggagcgctat
aactcactggacagcccttactgcggctctgcggaccacagggctgcactgcacaggact
caccgtcctgctgtctgctctcaggactcatactcacgcgttcctctcggctacgaggac
ctgcttcaccgcaaacaggaacagtgggcgcatcaccatggcaacgtcagtcggccttcc
cagtcctcacctgtctttgctgtcgatttttgtgccgagcatgctgatggtgtgggaggt
gcgtgtgtgagctgtaagtaccgtgcggaggagagtttggcccactactcgccctggtca
tgtggctccatcagccccttcgactcagagcaatacgccagctctacgtacagctcctgc
tcgcaacacatggaggtggagagtgggggaggcaagcgatggctgcacatgtttgagccc
taccgccgtctgaaagaagaggacccgatcatcccattcggggaggggcccatcatctcc
aagtggggggccatctcccgcgcctcccggaccggctaccacaccactgacccggtccag
gccaccgcctcacagggaggcgtcagcaccacacccatcaacttcagagattacagcccc
cacattggacatggagattacagatggggtccgcgaggttctgactcatccagccactcc
agcttcctggagagtgaccagttgggtgtgatggagctgcaggctcgccggccctctctg
attggtggagagaagctggagggggggcgctttcatccagaagcaagtcctaactgtgca
gagagcgaaccggaccgggacatcgagctggagctgtctgccttagacctagaggacaac
gaactgcaccagaacaccatacaggagcccctggaggtgagggtgcccgcccacagcgct
cttctctctccccccagcactgaaccccagaagcgctcccctgatgggatggaccaccac
ctgcttaagaagatggcgttcaggaaggctctgtcgccaggaggccttggctctgggcgg
ctgggcatagggaagctgacgatgaagacgggccccccaactctcgccgacagccaccgt
ccctccaccgccgggcctgaggtgctgctgaatggcagctga
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