Clupea harengus (Atlantic herring): 105902595
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Entry
105902595 CDS
T09045
Symbol
cntn1b
Name
(RefSeq) LOW QUALITY PROTEIN: contactin 1b
KO
K06759
contactin 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04514
Cell adhesion molecule (CAM) interaction
char04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
105902595 (cntn1b)
04517 IgSF CAM signaling
105902595 (cntn1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
char04515
]
105902595 (cntn1b)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
char00537
]
105902595 (cntn1b)
Cell adhesion molecules [BR:
char04515
]
Immunoglobulin superfamily
Contactins
105902595 (cntn1b)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
char00537
]
Others
105902595 (cntn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
FN3_DSCAM-DSCAML_C
Ig_4
Motif
Other DBs
NCBI-GeneID:
105902595
NCBI-ProteinID:
XP_031439202
Ensembl:
ENSCHAG00000024773
UniProt:
A0A6P8GUL3
LinkDB
All DBs
Position
16:complement(4332805..4357016)
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AA seq
1034 aa
AA seq
DB search
MATLAVQLCGVSLLLSLAGAYRMPWEPRIFADEATGYGPVFEEEPQDLVYAEDNPDNRIS
MNCRVRANPPAAIRWWLNNWEVKMLEQPDEYYSLVGGNLVITNPNKNKHTGKYVCVANNI
YGTIISKEATVKFGYLDNFPPEEREPVLVKEGQGVVLLCDPPNRDPNDVKFHWLFNDYPN
FIDMDRRRFISQTTGNLYIAMVEAQDVGNYSCFVSSPKIGKSVFSKPIPLVPQPQESPAK
KYAADIKVKFPKTYALLAKNITLECFALGNPIPHIRWRKLDADLPPNYEVTMNGALLHLI
NVQYEDEGSYECEALNVKGKDWHRQWLYVEGPPEWASHINNTEKDVGSEHTMRCAGMGKP
WPWIRWLKDGYSYGKGELQFSSLTFADSGMYQCVAENPWGTIYANAELRVISCAPTFEYN
PVRKQLLGARNGRVVIECKPRAAPRPKFTWLKGKEKLANSTRYSVWIEGNLEIFNATNED
EGVYTCFAENDRGKANSTGTLTITDATRIIVAPSDVDILVGDSTLLPCTASYDPSLDLTF
IWEVDSLLIDFATQGKHFELLLDRENSGDLLIKDALAKHSGRYSCTAQTVVDNITVIADV
LVKGLPGPPGGVMVEETRDTSVKLVWTRGSEHGIPITQHVIQTRDYYALDPDDWKDAKTS
PVFLDRFATAAEVXELFPYMLYEFRVIAINEMGPGEASWPSKKIRTWEAVPVVAPEDVGG
FVGIKGELTITWTPIQPQYYYGKKCGYVVAFKPHENYDWGWATVTDPETRRYVHRDLYIT
PATEIQVKVKAYNSKGEGPYSISSVVYAPEGVPSEQPLDVYARPVSSTEALVWWLPVYLQ
PPLQWVDGYQVRYWRKYDDNEAAAQRVLVGNGVNNTRLENMLPDSHYLIEVRAYNGVGLG
PPSEHCEMFTRRPPPSRRLRVFKYVSWSGKWLYLSWDHIYNYWNESFIEGYKILYRQVGY
RYGKLYTTGRHYIDFPMPETGDYIIEVRAHCEGGDGPVARVSIQGELGEYLSPAVFFPIA
GSSLIVNLPFSEPF
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctagctgtgcagctatgtggtgtgtccttgctcctctctttggccggtgct
tacaggatgccatgggagcctcgaatctttgctgatgaggccacgggttacggccctgtg
tttgaggaggagcctcaggacctggtctacgccgaggacaaccctgacaacaggatctcc
atgaactgcagggtgcgcgccaaccccccagccgccataaggtggtggctcaataactgg
gaggtgaaaatgctggagcagccggatgaatactacagcctggtggggggcaacctggtg
atcaccaaccccaacaagaacaagcacacgggcaagtacgtgtgcgtggccaacaacatc
tacggaaccatcattagcaaagaggccaccgtcaagttcggatacctggataatttcccc
ccagaggagagggagccggtgctcgtgaaggagggtcagggggtggtgctgctctgtgat
ccacccaaccgcgaccccaacgatgttaaatttcactggctgttcaacgattaccccaac
ttcatcgacatggacaggcggcgcttcatctcccagaccacagggaacctgtacatcgcc
atggtggaggcccaggacgtgggcaactactcctgcttcgtctccagccccaagatcggc
aagagcgtcttcagcaagcccatccccctcgtcccccagccacaggagagccctgctaag
aagtatgctgctgacatcaaagtgaagttccctaaaacgtatgccctgcttgccaaaaac
atcacgctggagtgctttgctctgggaaatcccattccacacattcgctggaggaagctg
gatgcggacctgccgcccaactacgaggtgacgatgaacggggccctgctgcacttgatc
aacgtgcagtatgaggacgagggcagctacgagtgcgaggccctcaatgtcaagggcaaa
gactggcacaggcagtggctctacgtggaaggaccccccgagtgggcctcccacatcaac
aacacagagaaagatgtgggcagtgaacacaccatgaggtgcgctggcatgggcaaaccc
tggccatggatacgctggctcaaggatggctactcgtatgggaaaggggagctgcagttc
tccagcctcacgttcgctgactctggcatgtaccagtgtgtggctgagaacccgtgggga
accatctacgccaacgctgaactcagagttatttcctgcgctccgacctttgagtacaac
cctgtaaggaaacagctcctgggggcgaggaacggccgcgtggtcatcgagtgcaaaccc
cgagcggcgccacgacccaagttcacctggctgaaagggaaggagaagctcgccaactct
acaaggtattcagtgtggatagaaggcaatctggagatcttcaatgcgacgaatgaggac
gagggggtgtacacctgctttgccgagaatgaccgagggaaagccaacagcacgggcact
ctcaccatcactgatgccactcggatcatcgtggccccctccgacgtggacatcctggtg
ggggacagcaccttgctgccctgcacagcctcctacgacccctccctggacctgaccttc
atctgggaggtggactccctcctcatcgacttcgccacgcaggggaagcactttgagctg
ctgctggatcgggagaacagtggtgacctgctgataaaggatgctctagcaaaacactca
ggccgatactcctgtactgcccagaccgtagtggacaatatcacagtgatagctgatgtc
ctagtcaaaggcctgccagggccccctggtggcgtgatggtagaggagacgagggacacg
tcggtgaagctcgtctggaccaggggcagcgagcatggcatccctatcacccagcacgtc
atccagacacgagactactatgccctcgaccccgacgactggaaggacgcaaagacctct
cctgtgttcctggatcgctttgccacagcagctgaggtgntggagctcttcccctacatg
ctgtatgagttccgggtgatcgccatcaacgagatgggtcctggagaggccagctggcca
tcaaagaagatcagaacctgggaagcagtccctgtggtggctcccgaagatgtcggaggc
tttgtggggatcaaaggcgagctcaccatcacctggacgcccatccagcctcagtattac
tatgggaagaagtgtggctacgtggtggcgttcaagccgcatgagaactatgactggggg
tgggccacggtgaccgaccccgagacgagacgctacgtccaccgagacctctacatcacc
ccggcaacggagatccaagtgaaagtcaaggcctacaacagtaaaggggaggggccctac
agtatctcttctgtcgtctatgcaccagagggggtgcccagtgagcagcccctggatgtg
tatgcccgtcctgtcagttccacggaggctctggtgtggtggctgcccgtctacctgcaa
cccccgctgcagtgggtggacgggtaccaggtgaggtactggaggaagtatgacgacaat
gaggcagcggcccagagggttctagtggggaacggcgtgaacaacacacgtctggagaac
atgctccccgactcgcactacctcattgaggtgcgggcctacaacggagtgggcctcggt
ccacccagtgaacactgtgagatgttcaccaggagaccacctccgtcacgcaggctgcgg
gtctttaagtacgtcagctggagtgggaaatggctctacctgtcctgggaccacatctat
aactactggaacgagtccttcatcgagggctacaagattctgtacaggcaggttggctat
cgctatgggaagctgtacacgaccggcagacactacatagacttccccatgccagaaacg
ggggactacatcatcgaggtgcgtgcccactgcgagggtggagatggaccggttgcacga
gtttccatccagggtgaacttggtgagtacttaagtcctgcagtctttttcccaatagct
ggtagttcattaatagttaatttaccattttcggagccattctaa
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integrated database retrieval system
