Clupea harengus (Atlantic herring): 105902806
Help
Entry
105902806 CDS
T09045
Symbol
trip12
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105902806 (trip12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105902806 (trip12)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
105902806 (trip12)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
HECT type E3
105902806 (trip12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
Motif
Other DBs
NCBI-GeneID:
105902806
NCBI-ProteinID:
XP_012685927
Ensembl:
ENSCHAG00000002859
UniProt:
A0A6P3W1U6
LinkDB
All DBs
Position
9:complement(20120269..20172415)
Genome browser
AA seq
2187 aa
AA seq
DB search
MSNRPNSNPGGSLRRSQRNTAAAQPQDYTATGRLQAGQVKHNAHSPPESRRPNLSKAPKA
PPSSASGSSRGHSSRRNPLSVSSLLVEPDPEAAGPSEPPRREGSRGQKRSSAPEPSSFGA
SSSSAAKKPKVLPPAPEGSSSSSSSSLAACTAASSQARKPPLCPGSKSKKRRAPAESQAQ
TNTKGNASANQRTHGSGSSSSASATRKSAAAASSSSPGALPSTSAAPPSHKRKKADSLPA
ASLSASCSSSSSSSSSSTTSSSSSSSAGPTPSRTSTAPAVLSTAAAKPSKLASKSAASAR
AGCSAATNTNATNSATANNTDSSLSSASSSSSSSSSSSSSSAPTAAAAAGAGSCAPPQPG
ARHKQGREPAGSSGAAGSSKARRSRSASSPSPRRSGRDKEQAKAAAAAAAAAAAAAGSSK
FEWASRFSPKVNLPKPKLSLPGSSSKTETASKPGPSGLQAKLASLRKSNKKRSESPPAEL
PSFRRSTRQKTTGSCASTSRRGSGLGKRGAAEARRQEKMADSDNNQDGANSSNARTDEAP
QGASASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTI
GSGASSKAQQLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKTVVPALIQLLQ
MEHNFDIMNHASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAEQALTALEMLS
RRHSKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVADSLPLLTQR
LTHQDKKSVESTCLCFARLVDNFQHEENLLQQVASRDLLTNVQQLLVLTPPVLSSGMFIM
VVRMFSLMCSNCPSLAVQLMKQNIAETLRFLLCGASNGSCLEQQIDLVPRSPQELYELTS
LICELMPCLPREGIFAVDAMLKKGSAQTTEGAIWQWRDDRGLWHPYNRIDSRIIETAHQN
GEDEISLTTLGRVYTIDFNSMQQINEDTGTARGIQRKPNPLANPNSGSHQEVRREDARAQ
LMKDDPELAKCFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFADADLLRDVLRNHA
VSSHIASMLSSQDLKIVVGSLQMAEILMQKLPDVFGVFFRREGVMHQVKTLADSETFLSN
TPRACSSTPPSLCTTTTTITTTTSSASSNAQPPADLGSPSFQHSMDDSLDLSPQGRLSDV
LKRKRLPKRGPRRPKYSPPRDDDKVDNQAKSPTTTQSPKSSFLANLNPKTWGKLGVQTNN
SSSEPSRTAGVSGLARPPAKDSVSNNRDKIKAWIKEQAVKFVERYFNTDSVDVSNPALNV
LQRLCTATEQLGLQVDEGVECLVEISGIVSESDVSSFEIQHSGLVKQMLLYLTSCGDRNT
VSRDQRIKRFLHVFCGCPQMPGQEARIDPAENLPLLALVHKMNNCLSQMEQFPVKVHDFP
SGNGNGSRGSQALKFFNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVR
GYGRIREEDEDSDDDGSDDEIDESLAAQFLNSGSVRHRLQFYMGETLLPYNMTVYQAVRQ
YSLQAEEERESTDDEANPLGRAGIWTKTHTIWYKPVREDEDGTKDAVGGKRGRAQTAPTK
TSPRNAKKQDELWHDGVCPSITNPLDTYLMSDPPEAITFDDPSLEVILLLRVLHSISRYW
FYMYDNAVCKEMVATTEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFD
TRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINRDELLKQAESL
MQDLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPKGSQE
STKYMFCSRGLFAVPFGRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGLPFYKW
MLRHETSISSHDLVNIDPSVAKSIQHLEDIIRQKKRLEQDRSHTRETLQQALESLNMNGC
SVDDLGLDFTLPGYPNIELKKGGKDVPVSIHNLEEYLRLVVFWTLNEGVSRQFESFREGF
ESVFPLHHLQYFYPEELDQLLCGSKSETWDVKTLMECCRPDHGYTHDSRAVRFLFEVLSS
FDAEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKL
PDYSSITIMREKLLIAAREGQQSFHLS
NT seq
6564 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaattccaatccaggggggtcactgcgacgttctcaaaggaacact
gctgcggcccagccacaagactacactgccacaggaaggctgcaggcagggcaggtaaaa
cataacgcacattcccctcctgaaagtagaagacctaacctctctaaggctcccaaagcc
ccacccagctcagcctctggctcctccagaggccacagctccagaagaaaccctctgtcg
gtgagttcattgctagtagaaccggacccagaggcggcgggcccctcggagccgcctaga
cgcgagggcagcaggggccagaagcgcagctccgcccccgagcccagcagcttcggcgcc
tcctcctcctcagccgccaagaagcccaaagtcctgcccccagcacctgagggctcttcc
tcctcctcctcatcttccttggccgcctgcacagcggcctcctcacaggccaggaagcct
ccgctctgcccaggatccaagtccaaaaagcgccgtgcgccagccgagagccaggcgcag
acaaacactaaaggcaacgccagcgctaaccagcgcactcacgggagcggcagcagcagt
agtgcctctgccaccaggaagagcgccgccgccgcctcctcctcctcccctggggccttg
ccgtccacgtcggctgccccacccagccacaagcgcaagaaggcggactcgctccctgca
gccagcctgagcgcctcctgctcttcctcctcgtcctcctcctcttcctctaccacctcc
tcctcctcctcatccagcgccgggccaacccccagccgcacctccactgcccccgcagtg
ctctccaccgccgccgccaaacccagcaagctggcgtccaagtcggccgcctcggccaga
gctgggtgtagtgccgccaccaacaccaacgccaccaactccgccaccgccaacaacaca
gactcctccctgtcctctgcctcctcttcatcttcctcctcctcctcttcttcttcgtcc
tccgcgcccacggcggcagcagcagcaggcgcaggcagctgcgctccaccccagccgggc
gcccggcacaagcagggcagagagcccgcaggcagtagcggcgcagcgggtagcagtaag
gcacgccgttcacgctcggcgtccagcccctccccgcgccgcagcggccgggacaaggag
caggccaaagcggcagccgcggcagcagcagcagcggcggcagcagcaggcagctcaaag
tttgagtgggcctctcgcttcagtcccaaagtcaacctgccaaagcccaagctgtctctg
ccaggatcctcctccaagactgagaccgcctccaaacctgggccctcgggactacaggcc
aaactagcaagtttgaggaagtccaataagaagcgcagcgagtctcccccagcagagctc
cccagctttcggcggagcacacgccagaagaccacgggctcctgcgccagcaccagtcgg
cgaggctcaggcctgggcaagcgcggggcagctgaagctcgccgacaggagaaaatggca
gactccgacaacaaccaagacggagccaactcctccaacgcgcgcactgacgaggcacca
cagggggcttcagcctcgagctcagtagctggagctgtaggcatgaccacgtccggtgag
agtgagtcggatgactccgaaatgggccgtctgcaagccctgttggaggccagaggtctc
ccccctcacctgtttggaccactggggccgcgcatgtctcagctcttccacaggaccata
ggcagcggggccagctctaaggcccagcagctgttgcaaggccttcaggccacaggtgac
gagtcccagcagctccaggctgccatagagatgtgtcagctcctggtcatgggcaacgag
gagacgctgggaggcttccccgtcaagaccgtcgtgcccgccctgatccagttgttacag
atggagcataacttcgatattatgaaccacgcgtcccgtgccctcacctatatgatggag
gctctgccacgctcctcggccgtggtggtggacgccatccctgttttcctggagaaactt
caggtgatccagttcattgatgtggctgagcaggctctgaccgctctggagatgttgtca
aggcgacacagcaaagccattctacaggctggtggtttggcagactgtctgctgtacctg
gagttcttcagtataaacgcccagcggaacgctctggctatcgccgctaactgctgccag
agcattaccccagacgagttccactttgtggctgactcgctgcccctgctcacacagaga
ctcacacatcaggataagaaatccgttgaaagcacttgtctttgttttgcccggctggtg
gataactttcagcatgaagagaacctgctgcagcaggtggcttcccgcgacctcctgacc
aatgtgcagcagctgctggtgctgacaccacccgtgctgagctcgggcatgttcatcatg
gtggtgcgcatgttctccctcatgtgctccaactgccccagtcttgccgttcagctcatg
aagcagaatatagcagagaccctgcgcttcctgctgtgcggagcgtccaatgggagctgt
ctggagcagcagatcgacctggtgcccagaagccctcaggagctctacgagctcacctca
ctcatatgtgagctgatgccatgcctgcccagagagggcatctttgcggtggacgccatg
ctgaagaaaggcagcgcccagaccacagagggggccatttggcagtggagggacgaccgg
ggcctctggcatccctacaaccgcatcgacagccgcatcatagagacggctcatcagaat
ggtgaggatgaaataagtctgaccacactgggtcgtgtttacaccatcgacttcaactct
atgcagcagattaacgaggacacgggcactgcccgaggcatccagaggaagcccaaccca
ctagccaaccccaactctggcagtcaccaggaggtgcgtcgtgaggacgcgcgtgcccag
ctgatgaaggatgaccctgagctggccaagtgcttcatcaagacgctgttcggcgtgctc
tacgaggtgtacagctcgtcggccggccccgccgtcagacacaagtgccttagagccatt
ctccgcatcatctacttcgccgacgccgacctgctgagggacgtgctgcgcaaccatgca
gtatccagtcatatcgcctccatgctgtcgagtcaagacctgaagattgtagtgggctct
ctgcagatggcagagatcctcatgcagaaactaccagatgtcttcggtgtcttcttcaga
agagagggagtgatgcaccaggtgaagacgctggccgattccgagacgtttctcagcaac
acccccagggcttgctccagcacccctcccagcctgtgcaccaccaccaccaccatcacc
acgacaaccagcagcgccagcagcaacgctcagcctcccgccgacctgggctctcccagc
ttccagcacagcatggacgactctctggacctcagcccacaggggcggttgagtgacgtg
ctgaagaggaagcgactcccgaagcgcggccccaggaggcccaagtactctcctcctaga
gacgatgacaaggttgacaatcaggccaagagtcctaccaccactcagtcacccaagtcc
tcgttcctggccaacctcaaccctaagacgtggggtaaactgggggtccagaccaataac
tccagttctgagccctctcgcacagcaggggtcagcggcctggcccggccccctgccaag
gactccgtctccaacaacagggataagattaaggcctggatcaaggagcaggccgttaag
tttgtggagcgctacttcaacactgacagcgtggacgtcagtaacccagccctgaatgta
ctacagagactctgcactgccacagagcagcttggccttcaggtggatgaaggtgtggag
tgccttgtggagatctctggcatcgtgtcggagtcggacgtgtcgtcgtttgagatccag
cacagcggcctggtcaagcagatgctgctctacctgacctcctgcggcgatcgaaacacc
gtcagccgcgaccagcgcattaagaggttcctgcacgtcttctgcggatgcccgcagatg
ccagggcaggaggcacggatagacccggctgagaacctgcctctgctggcgctggtgcac
aagatgaacaactgcctgagccagatggagcagttccccgtcaaggtgcacgacttcccc
tccggaaacggcaacggcagcagaggttcccaggcactgaagtttttcaacacgcaccag
ctcaagtgccagctgcagaggcacccggactgtaccaatgtcaagcagtggaagggaggc
ccggtgaagatcgaccccctggcgttggtgcaggccattgagagatatctggtggtccga
ggctatggacgaatcagggaagaggatgaggacagtgatgatgatggatcagatgatgaa
attgacgaatcactggcggcccagttcctgaactcgggcagtgttcgccaccggctgcaa
ttctacatgggcgagacgctgctgccctataacatgaccgtctaccaggccgtgcggcag
tacagcctgcaggccgaggaagagcgggagtctacggacgacgaggccaacccgctgggc
cgtgccggcatctggaccaaaacacacaccatctggtataagccagtgagggaggatgag
gacggcactaaggacgcagtgggaggcaagagaggaagagcacagaccgctcccaccaag
acctccccccgcaacgccaagaagcaggacgagctgtggcacgatggtgtgtgtcccagc
atcaccaaccccttggacacatacctcatgtccgatcccccggaggccatcactttcgat
gacccctccctggaggtcatcctgctgcttcgtgtcctccactccatcagccgatactgg
ttctacatgtacgataatgctgtgtgtaaggagatggtggccaccactgagttcatcaac
agcaagctgacggccaaggccaaccgccagctgcaggatcctctggtcatcatgaccggc
aacatccccacctggctcactgagctgggcaaaacctgccccttcttcttcccgtttgac
acacggcagatgctgttctacgtgaccgcgttcgatcgcgaccgtgccatgcagcgcctg
cttgacaccaaccccgagatcaaccagtctgactcccaggacagccgcgttgctccacgc
ctcgacaggaagaagcggacgataaaccgcgatgagttgctgaagcaggctgagtccctg
atgcaggacctgggcagttccagagccatgctggaaattcagtatgaaaatgaggtgggc
actggtctgggccccacgctggagttctatgctctagtatctcaggagctgcagagagct
gacctgggcctgtggagaggagaggaggtcaccctcagcaacccaaaagggagtcaggag
agcaccaagtacatgttctgctccagagggctgtttgccgtgccgtttggccgcaccacc
aaacccgcacacatcgccaagatcaagatgaagttccgcttcctgggcaagctgatggcc
aaagccatcatggacttcagactgctggatctaccactgggccttcctttctacaagtgg
atgctgcggcatgagacatccatcagctctcacgacctggtcaacattgacccgagtgtg
gccaagtccatccagcacctggaggacatcatccgccagaagaagagactggaacaggac
cgctcccacacgagggagacccttcagcaggcgctggagagtctgaacatgaacggctgc
tcagtggacgacctggggctggacttcaccctgcccgggtaccccaacatcgagctcaag
aaggggggcaaagatgtgcctgtctccatccacaacctggaagagtaccttaggttggtg
gtgttctggaccctaaatgagggcgtgtcacggcagtttgagtccttcagggaaggcttc
gagtcggtcttccccctgcatcacctgcagtacttctacccagaggagctcgaccagcta
ctctgtggcagcaagtcagagacctgggatgtgaagacacttatggaatgctgtcggcca
gaccatggttacacacacgacagccgggctgtgcggttcctgtttgaggtgctcagtagc
tttgatgcggagcagcagagactcttcctgcagtttgtcacagggagccccaggctgccc
gtcggagggttccggagcttgaaccctccgctgaccatcgtgcggaagacctttgagtcg
acggagaacccggacgacttcctgccgtcggtcatgacctgcgtgaactacctgaagctg
cccgactactccagcatcacgatcatgcgcgagaaactgttgatcgcggcccgcgagggc
cagcagtccttccacctctcctga
DBGET
integrated database retrieval system
