Clupea harengus (Atlantic herring): 105902831
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Entry
105902831 CDS
T09045
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1 isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105902831
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105902831
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105902831
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
105902831
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
TRIM_CC
PRY
zf-C3HC4
zf-C3HC4_2
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
zf-RING_2
zf-C3HC4_3
zf-RING_5
NDNF
Motif
Other DBs
NCBI-GeneID:
105902831
NCBI-ProteinID:
XP_012685964
Ensembl:
ENSCHAG00000017268
UniProt:
A0A6P3W0T9
LinkDB
All DBs
Position
16:complement(21322390..21353227)
Genome browser
AA seq
681 aa
AA seq
DB search
MDALESELTCPICLELFEDPLLLPCAHSLCFGCAHRILVSHCASNEPVQSIGAFQCPTCR
YVISLSPQRGLDGLKRNVTLQNIIDRVQRASSSHSSNALLLPPSGPSSPAEDGRYPLPLA
AMTTMPLPEPIQCQFCEQDPPQDAVKTCVTCEVSYCEECLRATHPNKKPFTGHRLIEPLP
DSHLRGLQCLEHEDEKVNMYCVTDEQLICSLCKLVGRHRDHQVAALNDRYEKLKQALESN
LGSLIKRNNELESLMGKLIQTCQHVEVNASRQEGKLMDECDLLIEIINQRRQLIGTKIKE
GKVVRMRKLAQQISNCKQCIDRSSALITQADQTLKETDHARFLQSAKSISDRVSMATASS
QVLIPEINLTDTFDTFALDFTREKKLLESLDYLTAPDPPNIREELCTASYDTITVHWTSD
DEFSVVSYELQYAIFTGQSNIVSLCNSMDSWMIVPNIKQNHYTVHGLQSGTKYIFIVKAI
NQAGSRSSEPGTLKTNSQPFKLDPKSAHRKLKVSHDNLTVERDETSSKKSHDKERFSSQS
SYGVTANVYIDSGRHYWEALIGGSSWYAVGIAYKSAPKHEWIGKNSASWVLCRCNNSWVV
RHNSKELAIEPSPHLRRVGVLLDYDVGTVAFYDAVGSQHLHTFHVSFSQPVCPVFNVWNK
CLTVLTGLPIPDHLEGVELLD
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgctggagtcggagctgacctgcccaatctgcctggagctctttgaggacccg
ctgctcttgccctgcgcccacagcttgtgtttcggctgcgcccaccgcatcctggtctcc
cactgcgcctccaacgaacccgtgcagtccatcggcgccttccagtgccccacgtgccgc
tatgtcatctctctgagcccgcagcgcggcctggacggactcaaacgcaacgtcacactt
cagaacatcatcgaccgcgtgcagcgggcctcctcctcccactcgtccaacgccctgctg
ttgcccccgagtgggcccagctcgcccgccgaggacgggcgctacccgctgccgctcgcc
gccatgacaaccatgccactccccgaacccatacagtgccagttctgcgagcaggacccg
ccgcaggacgcggtgaagacgtgcgtcacctgcgaggtgtcgtactgcgaggagtgcctg
cgcgccacgcaccccaacaagaagcccttcaccggccaccggctcatcgagccgctgccc
gactcgcacctgcgcggcctgcagtgcttggagcacgaggacgagaaggtgaacatgtac
tgcgtcactgacgagcagctcatctgctccctctgcaagctggtgggccggcaccgcgac
caccaggtggcagcgctgaacgatcgctacgagaagctcaagcaagcactggagtctaac
ctcggcagtctgatcaagaggaataatgagctggaatccctgatggggaagttgattcag
acctgtcaacatgtggaggtgaatgcatcccgccaggaaggcaagctgatggatgagtgt
gacctcctgattgaaatcatcaatcagagaaggcaactcattggcacaaagatcaaagag
ggcaaggtggtgcgcatgcgaaaactggcccagcagatttctaactgcaagcagtgcatt
gatcggtcctccgccctcatcacgcaagctgaccagacgctgaaggagacagatcacgcc
cgcttcctgcagtcggccaagagcatctctgacagagtctccatggcaacggcatcttcc
caggtgttgattcctgagataaacttgacagacacgtttgacacttttgcccttgatttc
acccgggagaagaagttgctggagagtttggattatctgactgctccggaccctcctaac
ataagagaggaactgtgcacagcctcctacgacaccatcactgttcactggacctcggac
gatgagtttagtgtggtgtcatacgagcttcagtacgccatcttcaccggccagtccaac
atcgtcagtctgtgtaactccatggacagctggatgattgtgcccaacatcaagcagaac
cactacactgtccatggtctgcagagcgggacgaagtatatcttcatcgtcaaagccatc
aaccaggctggtagccgcagcagtgagccagggaccctcaagaccaacagtcaaccattc
aagcttgaccccaagtccgctcacaggaaactgaaggtctcccatgacaacttgacggtg
gaaagggatgagacatcctcaaagaaaagtcatgataaggaacgtttcagcagccagagc
agctatggggtcactgcaaatgtctacatagacagcggacgccattattgggaggctctg
attggaggaagcagctggtacgcagtgggcattgcctacaagtctgcccccaaacatgaa
tggatcggcaagaattcagcttcctgggtgctgtgtcgctgcaacaactcttgggtggtg
cgccacaacagcaaggagctggccatcgagccgtccccccacctgcgccgcgtgggagtg
ctcctcgactacgacgtgggcaccgtggccttctacgacgccgtgggctcccagcacctg
cacaccttccacgtctccttctcccagccagtctgtcccgtcttcaacgtgtggaacaag
tgtctgacagtgctcaccggcctgcccatcccagaccacctggagggggttgaactcctc
gactga
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