Clupea harengus (Atlantic herring): 105903072
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Entry
105903072 CDS
T09045
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char02010
ABC transporters
char04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
105903072
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
105903072
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
char02000
]
105903072
Transporters [BR:
char02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
105903072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
DUF4162
AAA_23
AAA_29
Annexin
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
105903072
NCBI-ProteinID:
XP_031441261
Ensembl:
ENSCHAG00000012496
UniProt:
A0A6P8GRF3
LinkDB
All DBs
Position
18:complement(19828445..20050293)
Genome browser
AA seq
2270 aa
AA seq
DB search
MGLQTQLGLLLWKNFTLRKRQKVRLVVEVIWPLFLFFILVGVRSTNHPIYKGQCYYPNKA
MPSAGVLPWMQGIMCNLDNPCVSSPTPGETPGQVNNFNSSIVAGVLIELQTLLSVGLSPA
TVKQFLDDFGQESLVLQNADLGNGQLVPLRSLLRDDESFTAFLQDELAVSPPTAESLMET
SLRPNMIPLLLREQDLRSVLCEGPELERYLEFSSDTDRDVFQNLSCSLSPAQLRQTREAF
QQNLDPRNLPLALGLNPTQTVELFSKMTTDMAPLVDQMLRTQRTLFSLTDGLDFTNDTFS
SLNMLLCGQRPDFNSTATFTRARADSRAESENRDRSSQLPAQRNTSEFCQTFIDTLEGTP
SLRYLWSTFRPLLQGKVLFTPDTPVTRQLMAQANSTFDALARLKGLGEAWEQNEPEIWDF
FQNGSQVNTVRDLLRNPFFAAVLDQRLKGTGLTAALIANFLYNGPPEDRPAGMPNYDWRN
AFNTTSQILEQLTKFIGCLDLDKFEAMSDEGALVDRALELLNEEKYWAGVVVEGLDANAT
QLPAFVKYKIRMDIEDVERSNKIKDRSWYPGARDNSFNDMRYVWGGFAYLQDMIDRGIVQ
MHTGKSQPLGVFAQQIPYPCYVDDAFISSIGGILPMFLVLSFMYTVCQIIKGLVLEKETR
LKEVLRAVGARNGALWFAWFTENMVLLTVPCALISVMVKYGKVLSYSDPSVIFVFLLVFC
VATVMQCFFISVFFSRANLAAACGGLIYFLLYLPHSLCYAWRDVMTFPVKIAVSLLSCVA
FGYGCENFARYEEQGIGIQWHNIASSTEEGDGYSFLVSIVMMLIDAFIYWVLTWYIENVY
PGQYGIPKPWYFPFTRSYWCGTAAISDLGTEAQAHPEDQKGTTLANLGDHKGYLEKPPPN
VKVGVSVRNLVKIYKTGKKLAVDGLSMDFYENQITSFLGHNGAGKTTLMSILTGLFAPTS
GTAIINGFDIRTDMDSIRKHLGMCPQHNVLFNDLTVEEHIYFYARLKGRSKKEVDIEIDQ
MIQDVGLPHKRKELAKNLSGGMQRKLSVAIAFVGGSNIVILDEPTAGVDPYARRGIWELL
LKYKQGRTIILSTHHMDEADILGDRIAIISHGRMCCCGSSLFLKKCFGSGYYLTLVRSTE
DKMAAQRPAVNQNSKDSQSDSLDDGIGSQSSSCSDPPDVADVSSLIRKHVPQAVFLEGIG
QELTYILPYAGAKDGTFAQLFKELDLEMGELGITSYGISDTTLEEIFLKVAEDTGVDMEP
QDKTESFARDWKQSPRELRRNSISAAKISTEHQATPQTGAHQATPQTDGTGVERKGRFTS
KVEDWERGLSMNGKGSSVITGLRLIRRQFLALFIKRFHHARRSRKGLIAQVVLPAAFVCL
ALIFSLIVPPFREYPSLDLQPWMYGAPQNTFISVDEPNITEVSQVAESLLNDPGFGTRCM
PGNPMPNLPCEPQKATDWFTPPVDPAVSDIFAKGNWSMANPSPDCECSTPERSIMLPDCP
PGAGGLPPPQRTQNTTDTLHDLTGRNMTDYLLKTYEKSGKNRYGGISVGGVNSQVKLNES
EIATVFEDLQSLFNSSQDNTTDQLLQDMETLLKELGTQHNVKVWFYNKGLHAMVSFLSVA
NNGILRGNLPPSLDPRHFGISVSNHPLNLTKEQLSYVAMATTSTDVVVSICVIFAMSFIP
ASFVLFLIQERVSKAKHLQFVSGVNPAVYWVANFAWDMCNYIVPCVIVIVIFLCFQQKSY
VSPANLPALILLLVLYGWSITPMMYPASFLFSVPSTAYVVLTCINLFIGINGSVATFVME
MFDDENVSHINDIVKQVLLIFPHFCLGRGLIDMAKNQAIATLFQSLGEDRFEDPLGWDMV
GKNLFAMAVEGAVMFAITLLIQYKFCCKARLVSVVPSSEAEEDEDVARERARISQGSADK
DLLRICDLTKVYSGKKVPAVDRICVGVPAAECFGLLGINGAGKTTTFKMLTGDIAVSGGE
AFLNGHSIRTEMQSVHQNMGYCPQFDAIDDLLTGREHLEFYARLRGVPEKEVAMVAEWGI
QKLGLLKYSNKSAGTYSGGNKRKLSTAMALIGCPPVVFLDEPTTGMDPKARRFLWDCILS
VIKQGRSVILTSHSMEECEALCSRMAIMVNGQFKCLGSIQHLKSRFGDGYTVIVRVGGSS
PLLGPVEEFVRATFPGSVLKEKHHNTLQYQLPHVEGSLAMIFSQFTKHQQGLGVEDYSVS
QTTLDQVFVNFARLQHDEDDDAQAHGNVDDAQAYDNVVDLTDETPAGKIK
NT seq
6813 nt
NT seq
+upstream
nt +downstream
nt
atgggtctccagacgcagctcggactcctcctgtggaagaactttacacttcgcaagaga
caaaaggtgaggctggtggtggaggtgatatggccgctgttcctgttcttcatcctggtg
ggggtcagatccaccaatcatcccatctacaaaggccaatgctactaccccaacaaagct
atgccttctgctggagtgttgccatggatgcaaggcatcatgtgtaaccttgacaaccct
tgtgttagcagcccaacacctggagagacccctggccaagtcaacaatttcaactcctcc
atcgttgcgggggtgttaatcgaactgcagacgctcctgtccgtcggcctctccccggct
acggtcaaacaattcttggacgactttggccaggagtccttggttcttcaaaatgccgac
cttggaaatggtcaactggttcctctgagaagtcttctgcgagacgatgaaagtttcacg
gcgttccttcaagatgagcttgcggtgtcaccgcccaccgctgagagtttaatggagaca
agcctgcgccccaacatgatcccactgctcttgagggagcaggacctgaggtcagtgctc
tgtgagggcccggagctcgagaggtacctggagtttagctcggataccgatcgggacgtc
ttccagaacctcagctgctccctctcccccgcacagctgcgccagaccagggaggccttc
cagcagaacctggaccccagaaatcttcccttagctctgggtctaaaccccactcagact
gtcgagctcttcagcaaaatgacgacggacatggcccctctggtagaccagatgctgagg
acccagaggacactgtttagtctgactgatgggctagacttcacaaatgacacattcagc
agtctgaatatgctcctgtgtgggcaaagacctgacttcaactccactgccaccttcacc
cgagccagggctgattcacgggcggagtctgagaacagggaccgcagtagccagctgcca
gctcagagaaatacaagtgagttttgccagacgttcattgacactctggagggcacgccc
agtctgcggtacctgtggagcacgttcaggccactcctgcaagggaaggtcctcttcacg
ccagacactccagtcaccagacaactcatggcacaggcgaacagcactttcgatgccctg
gccaggctgaaagggctcggagaagcgtgggagcaaaatgagccagaaatctgggacttc
tttcaaaatggcagccaagtcaacacagtcagggacttgctgaggaatcccttttttgcg
gcagtcctagaccagcggctcaaagggaccggactaaccgctgcactcattgccaacttc
ctgtacaacgggcccccggaggaccgcccggcggggatgcccaactacgactggcgcaac
gcgttcaataccaccagccagattctggagcagctgaccaaattcattgggtgcctggac
ctggacaagtttgaggccatgtcagatgagggcgcgttggtggaccgggcgctggagctc
ctgaacgaggagaagtactgggcaggggtggtggtggaaggcctcgacgccaacgccact
cagctgccggcttttgtcaagtacaagataagaatggacatcgaagatgtggagagaagc
aataagattaaagacaggtcatggtacccgggggcccgagacaactcttttaacgacatg
cgctacgtgtggggggggttcgcctacctgcaggacatgattgaccgcgggattgtccag
atgcacacgggcaagtcccaacccctcggagtgttcgcccagcagattccgtacccctgc
tatgtcgacgacgccttcatctcaagcatcggtggcatcttgcccatgttcctggtcctg
tccttcatgtacacggtgtgccagatcatcaagggcctggtcctggagaaggagaccagg
ctgaaggaggtgctgcgggccgtgggcgcccgtaacggcgccctctggtttgcctggttc
acagagaacatggttctgctcaccgtgccctgcgcactgatcagtgtcatggtcaagtac
gggaaggtgctgagttacagcgacccgtccgtgatcttcgtcttcctgctggtcttctgc
gtggccaccgtcatgcagtgcttcttcatcagtgtgtttttcagtcgggcaaacctggcg
gccgcctgtgggggcctcatctacttcctgctctacctgccgcacagtctatgctacgcc
tggagagatgtcatgaccttcccggtgaagattgctgtgagtctcctctcctgcgtggcg
tttggctacggctgtgagaacttcgcccgctacgaggagcagggcatcggcatccagtgg
cacaacatcgccagcagcactgaggagggagacggctacagcttcctcgtgtccatcgtc
atgatgctgatcgatgccttcatctactgggtcctcacctggtacatagagaacgtctat
ccaggccagtatggcatccccaagccgtggtacttccctttcacccgctcctactggtgt
ggcacagccgccatctctgacctgggcacagaggctcaggcacacccggaggaccagaaa
ggtaccacactggcaaacctgggtgaccataaaggttacctagagaagcctcccccgaac
gtgaaagtcggggtgtccgtcaggaacctggtgaagatctataagacggggaagaagctg
gccgtggacgggctgagtatggatttctacgagaaccagatcacctcgtttctgggccac
aatggcgccgggaaaacaacattgatgtctatcctgactggcctgtttgccccaacctcc
gggacggccatcatcaacggctttgatatccgcaccgacatggactccatcaggaagcac
ctgggaatgtgtcctcaacacaacgtcttattcaacgacctgaccgtggaggagcacatc
tacttctacgcccgcttgaagggacggagcaagaaagaggtggacatcgagatcgaccag
atgattcaagacgtcggcctgccacacaagaggaaggagctggcgaagaacttgtccggt
gggatgcagagaaagctatctgttgccatagcgtttgtgggtggatccaacatcgtgatt
ctggatgagcccaccgctggagtggacccatacgcccggagagggatctgggaactcctc
ctgaagtacaaacaaggtcggaccatcatcttgtccacccaccacatggacgaggctgat
atccttggcgaccgcatcgccatcatctcccacggccgcatgtgctgctgcggctcctcc
ctcttcctgaagaagtgtttcggcagcggctactacctcaccctggtgcgctccaccgag
gacaagatggccgcccagaggcccgccgtcaatcagaactcaaaggattctcagagtgat
tcattggatgatggcatcggcagtcaaagctcaagctgttcagatcccccagacgtagca
gatgtcagtagcctgatcaggaagcacgtgccccaagctgtattcctggagggcattggc
caagagctgacctacatcttaccctacgcgggcgccaaagatggcaccttcgcccagctc
ttcaaagaactggacctggagatgggcgagttgggcatcaccagctacggcatctcagac
accactctggaggagatcttcctcaaagtagctgaggatactggtgtggatatggaaccg
caagataaaactgaaagttttgcacgcgactggaagcaaagtccccgagagttgcgacgc
aacagcatttctgctgcaaagatcagcaccgagcaccaagccacccctcaaacaggtgcg
caccaagccacccctcaaacagacggcactggagtggaacggaaggggaggttcacgagt
aaagtagaagactgggagaggggcctcagtatgaacgggaaaggctcctccgtcatcacc
ggcttgagactcatcagacggcagttcctggctctcttcatcaagcgcttccaccacgcc
agacgcagccgcaaaggactcattgctcaggttgtcttgccagctgcgtttgtgtgcctc
gcactcatcttctccctcatcgttcctccgttccgtgaataccctagcctagacctgcag
ccttggatgtacggtgccccacagaacaccttcatcagtgtggacgagcccaacatcacg
gaggtctcccaggtggccgagtccttgctgaacgaccccggcttcgggacacgctgcatg
ccgggtaacccaatgccgaatctcccctgcgagccccagaaggccacggactggtttact
cctccggtggaccccgccgtcagtgacatcttcgccaaggggaactggtccatggccaac
ccctcccctgactgtgaatgcagcacccccgagcggagcatcatgctgcccgactgcccc
ccaggagctggcggactgccccctccccagagaacccagaacacgacggatactcttcat
gacctgactggaagaaacatgactgattatctcttgaagacatacgagaaatcaggcaaa
aatcggtatggaggtatttcggtcggaggagtgaactcacaagtcaaactgaacgagtcg
gaaattgccaccgttttcgaggatttgcagagccttttcaattcctcgcaggataacacg
actgatcagctcctgcaggacatggagacgttgctgaaagagctcgggacacagcataat
gtcaaggtgtggttctacaacaaaggcttgcatgccatggtatctttcctgagcgtcgcc
aacaacggcatcctgcgtggaaacctgccccccagcctagacccacgtcactttggcatc
agcgtctccaaccacccactgaaccttaccaaggaacagctctcatacgtggccatggcc
accacctctacggacgtggtggtgtccatctgtgtgatcttcgccatgtcctttatcccc
gcgagtttcgtcctcttcctcatccaagagcgggtcagcaaggccaagcacctgcagttc
gtcagcggggtcaaccctgcagtctattgggtcgccaacttcgcctgggacatgtgcaac
tacattgtcccctgtgtgattgtgatcgtcatattcctgtgcttccaacaaaagtcctac
gtctcaccagccaacctgccggccttgatccttctgctggtcttgtatgggtggtccatc
acacctatgatgtacccagcatcctttctgttcagtgtgcccagcactgcgtacgtggtg
ctcacgtgcatcaacctcttcattgggatcaacgggagcgtggccacctttgtcatggag
atgtttgacgacgagaacgtcagccacatcaatgacattgtgaagcaggtgctgctgatc
ttccctcatttctgcctgggcagggggctcattgacatggccaagaaccaagccatcgcc
acccttttccaaagcttaggtgaggaccgctttgaggaccccctgggttgggacatggtg
gggaagaacctgtttgccatggcagtggagggagcagtgatgttcgccattacgctgctc
attcagtacaagttctgctgcaaggccaggctggtgtctgtggtgccatcatcggaggct
gaggaggatgaggatgtggcccgtgagagagcacgtatcagccagggcagtgctgacaaa
gacctgctccggatatgtgacctcaccaaggtgtactctgggaagaaggttccggctgtg
gacagaatctgtgtgggcgtcccggcggcagagtgcttcgggctgttgggcattaatggc
gctgggaagaccaccacgtttaaaatgctgacgggggacatcgccgtctccggtggggag
gccttcctaaacggccacagcatccggacagaaatgcaatcggtccaccagaatatgggt
tactgtccgcagtttgatgccatcgatgacctcctgaccggccgagaacacctagagttc
tacgcccggctccgtggcgtgcctgagaaagaggttgccatggtggcggagtggggcatc
cagaagctgggtctgctcaagtactccaacaagtccgctggcacctacagcgggggcaac
aagcgcaagctctccacagccatggctctgattggctgcccgcccgtcgtcttcctggat
gagcccacgacaggcatggaccccaaagcgcgtcggttcctgtgggactgtatcctgagt
gtcatcaaacagggccgctccgtcatcctcacctcacacagcatggaggagtgtgaagct
ttatgtagtcgcatggccatcatggtcaatggacagtttaaatgcctgggcagcattcag
cacctgaagagcaggtttggggacggctacacggtgatcgtgagggtggggggctcatcc
ccactcctggggccggtggaggagtttgtgagggccaccttccccgggagtgtgctgaag
gagaagcaccacaacaccctgcagtaccagctgccacacgtagagggctctctggccatg
atcttcagccagttcaccaaacaccagcaggggcttggcgtggaggactactctgtctcc
cagacaacgctggaccaggtctttgtcaacttcgccaggcttcagcacgacgaggacgat
gacgcccaggcccacggcaatgtggatgacgcccaggcctacgacaatgtggtggacctg
acggatgagacgcctgctggcaaaataaaatag
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integrated database retrieval system
