Clupea harengus (Atlantic herring): 105903233
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Entry
105903233 CDS
T09045
Symbol
usp16
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 16
KO
K11844
ubiquitin carboxyl-terminal hydrolase 16/45 [EC:
3.4.19.12
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
105903233 (usp16)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
char01002
]
105903233 (usp16)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105903233 (usp16)
Enzymes [BR:
char01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
105903233 (usp16)
Peptidases and inhibitors [BR:
char01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
105903233 (usp16)
Ubiquitin system [BR:
char04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
105903233 (usp16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
Motif
Other DBs
NCBI-GeneID:
105903233
NCBI-ProteinID:
XP_012686399
Ensembl:
ENSCHAG00000001999
UniProt:
A0A6P3W0I2
LinkDB
All DBs
Position
9:complement(1955392..1965378)
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AA seq
842 aa
AA seq
DB search
MGKKKGKDKSSKEEDCIDLTGPSCSHIRKGIDHSLFKRTAPDVDWNSCQDCQGGLNTNSE
DEINGEPQVLWVCLKCGHRGCGRYSEDQHAVKHFEKPRSDTHCLVLNLDNWSVWCYICDD
DVQYSSTGQLAQLVANIKKLAPSDSERKVKKTKEPRVSRNDLKDEEANHVEEEKESKGRQ
KKSVKKDASPKEKKTEAVGNSGALSVKGLSNLGNTCFFNAVVQNLSQTSLLRQVLGGVTN
EKTRVILTPSVSSELEPIEVQLDQPGSLTLSMWQLLNEIQETKKGVVTPRELFTQVCKKA
ARFKGFQQQDSQELLRYLLDGMRAEEIKRIHSGISEVLKSSGKNADSEESKTLIKHYEKN
GAHKNFVDHVFGGEMTSTVMCKECKTVSIVTEMFLDLSLPVSDEAYRKKNQKKVVQRSSV
SDDGMDSPTPVTNGNDDLPTGSGSKYQQKKAKKQAKKQSKNQRRQQKPEVKVTLDELGSQ
DEMGGGDAEASAPQSTSTEPDAGAETEEKTQTDTNQLSEVDHSEQGQKEMDDESKDEGQQ
QQQQKEDEEEEEEEAADDSAVSNRFMALAEDQTEEDVAEEKKEEEEEEKKEEEEEEKLAE
ELKHLSLNGTLESCEPGTENGEVSDESREYTVVNQDPEKAFHTLATRTTPDKQECSVASC
LIQFTEVEKLSQSNSLLCITCTKHQSASKSAEGAKKNVYRDALKQMLISSPPPVLTLHLK
RFQQVGYSVCKVNRHVQFPQLLDLAPYCSVNCKNVSEGMTQVLYSLYGIVEHSGTMRSGH
YTAYVKARPHCQNMSSNGAAKQGDGEPPAGSWFYISDSSVQPVTEAKAQSSQAYLLFYER
IS
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgggtaagaagaaaggaaaggacaaaagttccaaagaggaagactgcatcgacttgaca
ggcccttcctgttcccacattcgcaagggaatagaccacagcttgtttaagaggactgct
ccagatgtagattggaactcgtgtcaagactgccaagggggattgaacacaaattctgag
gatgaaattaatggagagccacaggttctatgggtgtgtctgaaatgtggacacagaggc
tgtgggagatactcagaagatcaacatgctgtgaagcactttgagaagccacgttcagat
acgcattgccttgtactgaatctggacaattggagtgtgtggtgttacatctgtgatgac
gacgttcagtattcaagcacaggacaactggctcagttggtggccaatataaaaaaactg
gcaccgtcagacagtgaaagaaaagtaaaaaaaacaaaagaaccaagagtcagccgtaat
gacttgaaggacgaggaagccaaccatgtggaggaagaaaaggagagcaaaggcagacaa
aagaagagtgttaagaaagatgccagcccaaaggaaaagaagactgaggcggtgggaaac
agtggtgctctttcagtcaagggtctaagcaatcttgggaacacctgtttcttcaatgct
gttgtacagaacctgtcacagacatcgcttttgaggcaggtcctcggtggtgttactaat
gagaagaccagagtgatcctgacacctagcgtctcctcagaactggagcccattgaagtg
cagctagatcaacccggatcccttaccctctccatgtggcagctgcttaacgagatccag
gaaaccaagaaaggggttgtcactcccagggagctgttcacccaagtgtgtaaaaaggct
gccaggttcaaaggtttccagcagcaggacagccaggagcttctgcggtatttgctggac
ggtatgagagctgaggaaattaaaagaattcattctggaatatcagaagttctgaagagc
tctggaaagaatgctgattcagaagaatccaagacattgattaaacactatgagaaaaat
ggagcgcacaaaaactttgttgaccacgtctttgggggagagatgaccagcacagtgatg
tgcaaagaatgcaagacggtgtccatagtgacggaaatgttccttgacttgtcacttcct
gtttcagatgaggcatacaggaaaaagaatcaaaagaaagtggttcagaggagtagtgtg
agtgatgatggtatggacagtcctactccggtgaccaatgggaatgatgacttgccaaca
gggtctggcagtaagtaccagcagaaaaaagccaagaagcaggccaagaaacaatctaag
aaccagaggcggcagcagaagccggaagtgaaagtcacactggacgagctagggagccag
gacgagatgggtggcggtgatgcagaagcgtcagccccacagagcacatccacagaacca
gacgccggcgccgagactgaggagaaaacccagacggacacgaaccagctgtcagaggta
gatcactcagagcagggccagaaggagatggatgatgagtccaaggatgaaggtcagcag
cagcagcagcagaaggaagatgaagaggaggaggaggaggaggccgcagatgattctgca
gtcagcaatcgttttatggcgcttgcagaggaccagacagaagaggatgtggcagaggag
aagaaggaggaggaggaggaggagaagaaggaagaggaggaggaggagaaattggctgaa
gagctgaaacacttgtccttaaatgggactttggagtcttgtgagcctggcactgagaat
ggggaagtgtctgatgagagccgggagtacactgtggtgaaccaggacccagagaaggcc
ttccacaccttagccaccaggacgacgcccgacaagcaggagtgctccgtggcgtcctgc
ctcatccagttcaccgaagtggagaagcttagccagagtaacagcttgctgtgtatcacc
tgcacaaaacaccagtctgcttcaaagagtgcagaaggcgccaagaagaatgtgtacaga
gatgccctgaagcagatgctcatctcgtctccgccaccggtgctgacacttcacctgaag
agatttcaacaggttggttacagtgtatgcaaggtgaaccgtcatgtccagttccctcaa
cttttagacttggcaccatactgctcggtcaactgcaagaacgtgtcagagggaatgact
caggtgctgtacagcctctatgggattgttgagcacagtgggacaatgagatcggggcac
tacactgcctacgtgaaagctcggcctcactgtcaaaacatgtcatccaatggtgcagcc
aagcaaggtgatggtgagccaccggcaggatcgtggttttacatcagtgactcaagcgtc
cagcctgtcacggaagccaaagcgcagagttcccaagcctacctcctgttctacgagagg
atctcctaa
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