Clupea harengus (Atlantic herring): 105903324
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Entry
105903324 CDS
T09045
Symbol
rab11fip3
Name
(RefSeq) rab11 family-interacting protein 3 isoform X3
KO
K12485
Rab11 family-interacting protein 3/4
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
105903324 (rab11fip3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105903324 (rab11fip3)
Membrane trafficking [BR:
char04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
105903324 (rab11fip3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD-FIP
EF-hand_7
EF-hand_6
EF-hand_8
EF-hand_1
EF-hand_5
DivIC
HALZ
EF-hand_9
Tox-HNH-EHHH
ZapB
WD40_alt
Tweety
DUF4600
Motif
Other DBs
NCBI-GeneID:
105903324
NCBI-ProteinID:
XP_012686510
Ensembl:
ENSCHAG00000008586
UniProt:
A0A6P3W0N8
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All DBs
Position
23:4411725..4442153
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AA seq
917 aa
AA seq
DB search
MLLAAGSPEQTQVIDVFPEDVIDAGSSPDSFTIAEINTSDKRDTLDSEHSDTIPIITHGN
TNTHIFNTENIKDNIVVSVNSENIEDITTLQRQHLDTLDSPEPENSSIPPEFNAQKLDNT
HKLNLENSQQYCTENIDRTDLLTSECITHTMNTEVADDSQTFKTNHPDFLHTPDTENTAE
LDTTCPDQQIVDGSDFCVEPISDGVSTQPQEKPSMHGDPSELSSENTPALDSCSLDTRSG
SVSVCAEDQDVLTTPVSLPLLLTCAGDQLSDMGGAPGQTCSANHTPAQLEVNQGEGEALT
LTQASIEKVTQAQRDGSSPTEGTTRQLMEENNVAVLPEYESLDLDPQGTMEVQSAGPISV
AMVSTEPLRAVFQALDQDGDGFVRMEEFLEFAAAYGAEQVKDLTRFLDPSGLGVISFEDF
HRGITAISNGGSDPDLYRLELNATDAGVPAEEYDEQAEVSDSVYLGSESAYSECETFTDE
DTGALAPPELHEDVETDSGIENTLTEGDDHRNRFSLGADLHGHALSAVIGGEEEHFEDFG
ESNTSDLLLANHEEGRPGPEGAGDPEPHLHPGSPNRCPQVLSPSSGKRLSSKKAARLLQN
SALGLEGMGDLGHGILDLSDTDITDKVLLLERRVCELEQDSALSEEQHCRLRQENLTLVH
RANALEEQLKEQEVRSDETLHMHTRKHRDALAKLQRDRDLEIENLQARLNQLDEENSELR
SCVPCLKANIERLEEEKRKLQDEVEDMTERLNEEMDSRRKMADKLSHERHNNQKEKESMQ
ELIEDLRKQLEHLQLFKLEMEAKRGRSPSAGLQEYNTRTREHELEQEIRRLKQDNRGLKE
QNDELNGQIINLSIQGAKSLVAESFSDSLAAEINSVSRGELMEAIHKQKEINFRLQDYID
RIIVAIMECNPSILEVK
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgcttctagctgctggttctcctgaacaaacgcaagtgattgatgtctttcctgaggat
gtcattgatgcaggtagctcacctgattctttcactattgctgagataaatacctcagat
aagagagacacacttgactctgaacattcggataccataccaataattacccatggaaat
acaaacacacatatattcaacactgaaaatataaaagataacatagttgtttctgtaaac
tctgaaaacatagaggacataaccacactccaacgtcaacatttagataccttggactcc
ccggaacctgaaaattcaagcataccaccagaattcaatgcacaaaagctggacaatacc
cacaagttaaaccttgaaaactcacagcaatattgcactgaaaacattgacaggacagac
ctactcacatctgaatgcatcacacacaccatgaatactgaagtggcagatgactcacag
acattcaaaactaaccacccagatttcttacacactcctgacactgaaaacacagctgag
ctggacaccacttgccctgaccaacagattgttgatggtagtgacttttgtgttgaacca
ataagtgacggtgtcagcacacagcctcaggaaaaaccttccatgcatggcgacccttca
gagttaagcagtgaaaacactcctgccctggacagctgttctctagacactcggtcaggt
tctgttagtgtatgtgctgaagaccaggatgtcttaaccacaccagttagcctccccctc
ctcctcacctgtgcaggtgaccagctgagtgacatgggaggagccccaggtcagacctgc
tcagccaatcacacaccggctcagttggaagtgaaccagggggagggagaggcactcaca
ctcacccaggcgagtattgagaaggtaactcaagcccagcgcgatggcagctcaccgacg
gagggaaccacgcgacagttgatggaggaaaacaacgtggcggttttacccgaatatgag
agcctggatctcgatccacagggcaccatggaagttcagagcgcggggcccatctctgta
gccatggtgtccacagagcccttgagagcagtgttccaggcgctggatcaggatggggat
ggatttgtacgcatggaggagttcctggagtttgctgctgcatatggagctgaacaggtg
aaggacctgactcggtttctggaccccagtggactgggtgtcattagctttgaggatttc
caccgcgggatcacagccatcagcaatggaggttccgatccagacctctacagactggaa
ctcaatgctacagacgctggtgtaccagcagaggagtatgatgagcaggcagaggtgtcg
gacagtgtgtacctgggttctgagagtgcctacagtgagtgcgagacgttcacagatgag
gacacaggcgcgctcgctccccccgagctgcacgaggatgtggagacggacagcggcatc
gagaacacactcaccgagggagacgaccaccgtaacaggttctctctgggggcagatctg
catggccacgccctgtcagccgtgattggcggggaggaggagcactttgaggactttggg
gagagcaacacctccgacctgctgttggccaatcacgaggaggggagaccggggcctgag
ggggcgggagaccctgagccacaccttcaccctggaagccccaaccgctgccctcaagtc
ctgtcacccagctccggcaagaggctgtccagcaaaaaagcagcgaggctactccagaac
agtgctctgggtctagagggtatgggagacctgggccatggcatactggacctctcagac
acagacatcactgacaaggtgctgctgttggagcggcgtgtgtgtgagttggagcaggac
tctgctctgagcgaggagcagcattgccgtctgcggcaggagaacctgacactggtgcac
cgggccaatgctctggaggagcagctcaaggagcaggaggtgcgctccgacgaaacgctg
cacatgcacacacgcaagcaccgcgatgccctggccaagctgcagcgcgacagggacctg
gagatcgagaacctccaggccagattgaatcagctggatgaggagaacagtgaactgagg
tcgtgtgttccctgtctaaaagcaaacattgagcgactggaagaggagaagcgtaagctg
caggatgaggtggaggacatgaccgagcggctgaatgaagagatggactctcgcaggaaa
atggcggacaaactaagccacgagcgccataacaaccagaaggagaaggagtcgatgcag
gagctgattgaggacttgcgtaagcagctggagcacctgcagctcttcaagctggagatg
gaggctaagagaggtcgctcgcctagcgccggtctccaggagtacaacacacgcacgcga
gagcacgagctggagcaggagatccgcagactcaaacaggataaccgcggtctgaaggag
cagaatgatgagctgaacggacagattattaacctgagcatccagggagccaagagcctg
gtagctgagtccttctctgactcacttgctgctgagatcaactcggtgtctcgcggcgag
ttgatggaggccatccacaagcagaaggagatcaacttcagactacaggattacatcgac
cgcatcatcgttgctatcatggagtgcaacccctctatcctggaagtcaagtag
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