Clupea harengus (Atlantic herring): 105903382
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Entry
105903382 CDS
T09045
Symbol
polr3a
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1 isoform X1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03020
RNA polymerase
char04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105903382 (polr3a)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
105903382 (polr3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105903382 (polr3a)
Enzymes [BR:
char01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105903382 (polr3a)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
105903382 (polr3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3654
Motif
Other DBs
NCBI-GeneID:
105903382
NCBI-ProteinID:
XP_031416674
Ensembl:
ENSCHAG00000023943
UniProt:
A0A6P8EWK1
LinkDB
All DBs
Position
23:855540..887091
Genome browser
AA seq
1402 aa
AA seq
DB search
MVKEQFRETDVAKKISHICFGMKSAEQMRQQAHIQVVSKNLYSQDTSHTPLAYGVLDHRM
GTSEKDRPCDTCGKNLADCLGHYGYLDLELPCFHVGYFKAIIGILQMICKTCNHIMLSKE
DKLQFMDLLRRPGLVYLQKRGLKKKISDKCRKRTVCLNCNAFNGPVKKCGLLKILHEKYK
TTKKVVDPIVTDFLQSFDIAIEHNKEVEALLTRAQENLNPLVVLNMFRRIPAEDVPLLLM
NPESGKPADLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMSG
AKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKR
VDFSGRTVISPDPNLRIDEVAVPIHVAKILTYPEKVNKANIEMLRKLVKSGPEVHPGANF
IQQRHNQMKRFLRYGNREKMAQELKFGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIAVV
KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIA
AIQDFLTGAYLLTLKDTFFDRSKTCQLVASILAGKDEKIKITLPRPSIMKPVTLWTGKQI
FSLILKPGAACPVKANLRTKGKQYSGKGEDMCSNDSFVVIQNSELLCGTMDKGTLGSGSK
NNIFYILLRDWGQMEAADAMSRLARLAPCYLSNRGFSIGIGDVTPGQGLLKAKQDLLDAG
YKKCDEYIEALKTGKLAPQPGCTPDETLEALILRELSVIRDHAGSACLRELDKSNSPLVM
ALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFDKHSKLPAAKGFVADSFYS
GLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQF
IYGGDGLDPAAMEGKDEPLEFKRVLDNIRSVFTCPDEPALSRNELVLTAESIMKKTDFMC
CRDTFLDALTESGCQKYLEEIKKFIKSVSDKIKKTRDKYGINDNGTTEPKVLYQLDRITP
TQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVP
RIKEIINASKNISTPIITANLDVDDDADFARLVKGRIEKTLLGEISEYIEEVFLPDDCFI
LVKLSLERIRLLRLEVNAETVRYSICMSKLRVKPGDIAVHGEAVVCVSPRENSKSSMYYV
LQTLKQDLPKVVVQGIPEVARAVIHIDEASGKKKLKLLVEGDNLRSVMATHGVKGSRTTS
NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGL
AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADK
DPNPPRRPLLFDSPEFHIPLVT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaggaacaatttagagagacggatgtggccaagaaaataagccacatctgtttt
gggatgaaatctgccgagcagatgcgtcagcaggctcatatccaggtggtcagcaagaat
ctgtacagccaggacaccagtcacacaccactggcctacggtgtcctggatcatcgcatg
ggcacgagtgagaaggaccgaccatgtgatacgtgtggaaagaacttggcagactgtctg
ggtcactacggatacctagacttggagctaccctgctttcatgttggctacttcaaagcc
atcataggaatcctacagatgatctgtaaaacgtgtaaccacatcatgctgtccaaagag
gacaagcttcagttcatggacctcctcagaaggcccggcctggtctaccttcagaagcgc
ggcctgaagaagaaaatctctgacaagtgcaggaagaggactgtctgtctgaactgcaat
gcattcaatggtccagtgaagaagtgtggtttgttgaaaattctccatgagaaatacaag
actactaagaaagtggtggaccccatagtgacagactttctgcagtcctttgacatcgcc
atcgagcacaacaaagaagtggaggcgctactgacgcgggctcaagaaaacctgaacccg
ctggtggtgctgaatatgttccggaggattccggcggaggatgtgccgctgctgctgatg
aacccggagtcggggaagccggccgacctcatcctgacccgcctgctggtgccgccgctc
tgcatccgaccctcggtggtcagcgacctcaagtccggcaccaacgaggatgatctcacc
atgaagctcacggagatcatcttcctcaacgacgtcatcaagaagcatcgcatgtctggg
gcgaagacgcagatgatcatggaggactgggacttcctgcagctgcagtgcgccctgtac
atcaacagtgagctgtcaggcatccctctcaatatggcacccaagaagtggaccagaggc
ttcgtgcaaagactcaaggggaagcaagggcgtttccgtggaaacctgtcaggaaagcga
gtggatttctctggcagaacggtcatctcccccgaccccaacctgcggattgatgaggtg
gcagtccccatccatgtcgccaagatcttgacctacccagagaaggtgaacaaagccaac
attgaaatgttgaggaagctggtgaagagcggaccagaggtgcaccctggggccaacttc
atccagcagagacacaaccagatgaagaggttcttgaggtacggcaaccgcgagaagatg
gctcaggagctgaagtttggcgacgtggtcgagaggcacatgatcgacggcgacattgta
ctcttcaaccggcagccctcactgcacaagctcagtatcatggcgcacatagcggtagtg
aaaccccaccggacgttccgcttcaacgaatgcgtctgcacgccctacaacgccgacttt
gacggcgacgagatgaacctccaccttccccagacggaggaggccaaggctgaggccctc
gttctcatggggacaaaagccaacctggtcacaccaagaaacggggagccgctgattgcc
gccattcaggactttctaacaggagcttacctgctgacgctgaaggacaccttcttcgac
cggtcgaaaacctgccagctcgtggcctccatcctcgcgggcaaagacgagaagatcaaa
ataactctgccccgcccttccatcatgaagcctgtgaccctgtggacggggaagcagatc
ttcagcctgatcctgaagcccggcgcagcctgtcctgtcaaggccaacctgcgcaccaaa
ggaaaacagtacagcggcaaaggagaggacatgtgctccaatgactccttcgtggtgatc
cagaacagtgagttgctgtgcggcaccatggacaagggcacgctgggctccggctccaag
aacaacatcttctacatcctgctgcgcgactggggccagatggaggcggctgacgccatg
tcccgcctggcccgcctggccccttgctacctgtccaacagaggcttctccattggcatc
ggggacgtcaccccgggccaggggcttctgaaggccaagcaggacctgctggacgccggc
tacaagaagtgtgacgagtacatcgaggccctgaagactggcaagctcgccccacagcca
gggtgcacaccggacgagacgctggaggccctgattctgagagagctgtccgtcatcaga
gatcatgcaggtagtgcctgtctccgagagctggataaaagcaacagtcccctcgtcatg
gccttgtgtggctctaaagggtctttcatcaatatctctcagatgatcgcctgtgtcggt
cagcaagccatcagtggctcacgtgtgcctgatggctttgagaaccgctccctgccccac
ttcgacaagcactcaaagctccccgcggccaagggctttgtggcggacagcttctactca
ggcctcacccccacggagttcttcttccacactatggccggcagggagggcctggtggac
accgctgtgaagacggctgagactggatacatgcagaggcgtctggtgaagtccctggag
gacctgtgttcccagtacgacctgactgtgcgcagctccacgggtgacatcatccagttc
atctacggaggcgacggtcttgatcccgccgccatggagggaaaggatgagccgctggag
ttcaagagggtcctcgacaacatcaggtctgtgttcacgtgtccggacgagccggccttg
agcagaaatgagctggtgctcaccgccgagtccatcatgaagaagaccgacttcatgtgc
tgcagagacaccttcctcgacgcattaactgaatctggatgtcagaagtacctcgaggaa
ataaagaaattcattaagagcgtctccgacaaaatcaagaagacccgagacaagtacggc
ataaacgacaacggcaccaccgagccaaaggtcctctaccagctagacaggatcactccc
acccagcttgagaagttcctggagacatgcagagacaagtacatgagggctcagatggag
ccaggctcggcggtgggggccctctgtgcccagagcattggggagccgggcacgcagatg
accctcaagaccttccacttcgctggagtagcctccatgaacatcaccctgggtgtgccc
cgcatcaaggagatcatcaacgcctccaagaacatcagcactccgattatcaccgcaaac
ttggacgtggatgatgatgctgacttcgcccgtctggtgaaaggccgtattgagaaaacg
ctgctaggagagatctcggagtacatcgaggaggtgtttcttccggacgactgtttcatc
ctggtgaagctctccctggagaggattcgactcttgcgactggaggtcaatgcggagacg
gtgcgttactctatctgcatgtccaagctgcgggtgaagcccggggacatcgcggtgcac
ggcgaggcggtggtgtgcgtgtcgccgcgggagaacagcaagagctccatgtactacgtg
ctgcaaacgctcaagcaggacttacccaaggtggtggtgcaagggatccctgaggtggcc
cgcgccgtcattcacattgacgaggcgagtggcaagaagaagttaaaactgctcgtggag
ggagacaacctccggagtgtcatggcaacccatggcgtgaaaggcagcaggacgacctcc
aacaacacttacgaagttgagaagacccttggcatagaagcggcccgcaccaccatcatt
aacgagattcagtacaccatggtcaaccacggcatgagtatcgaccgcaggcacgttatg
ctgctggctgacctcatgtcctataagggagagatcttgggaataaccaggttcggcctg
gctaaaatgaaggagagcgtgctgatgctggcgtcctttgagaaaactgccgatcatctg
ttcgacgcagcgtactttggacagaaggactctgtttgtggtgtgtctgagtgcatcatc
atgggcattccgatgaacattggaaccggcttgttcaagctgctccataaggccgataaa
gacccaaacccaccccgccgaccgctgctcttcgacagcccagagttccacatccctcta
gtcacctag
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