Clupea harengus (Atlantic herring): 105903530
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Entry
105903530 CDS
T09045
Symbol
zcchc7
Name
(RefSeq) zinc finger CCHC domain-containing protein 7 isoform X2
KO
K12597
protein AIR1/2
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105903530 (zcchc7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105903530 (zcchc7)
03016 Transfer RNA biogenesis [BR:
char03016
]
105903530 (zcchc7)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105903530 (zcchc7)
Transfer RNA biogenesis [BR:
char03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105903530 (zcchc7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCHC
AIR2-like_ZnK4
Motif
Other DBs
NCBI-GeneID:
105903530
NCBI-ProteinID:
XP_012686749
UniProt:
A0A6P8ESA8
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Position
22:complement(5840063..5896557)
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AA seq
611 aa
AA seq
DB search
MFSEYPEGEEYEDDLYCDSDEDSGLSADSDVERYLYSQLHYASCPTDTSQASISTPKIQP
QVAEPLVGNKKRTQPQPRPPEVIVIDSGSDIILGSDDDGICSYKGSRAHLHRKTPTTMRT
SSSASGTSSASKGLSSRPAQVVVLGSDDSSEDSSEGDSEQSSERSEDAGRQKGNKAVDLR
SDSDSDDSDSDSDGLEKWMLLGQDNHNEDQSIQLNVSGTDVTDDQDSAVWTISQRDKLAQ
ISNSRGNRLASRPAKRYYTEKNVVCNNCQCTGHLSKSCPRPQKLHPCLHCGLLGHLYRTC
PSVYCRNCALPGHTPDVCPEQSYWFKHCHRCNMKGHFQDACPQIWRQFHITTHAGPLCKP
ADPQAHSTTPYCCNCSQKGHFGFECSQRRMFSGIYPSLPFTDHYDRPKDFKRRDNFLKKK
AKDLEEAGLLVLGPTHETEATGFSSPLYKKQKTHNHPQHKNKSPHKNFQQGSSKQKNPYL
ERTIHKKNNPKTSLSIKPKHLFFGKNRTPRDRDAATAPAPACNNQTKPKKQRKAHRNGLL
EDGEDFPRGPRDWTPNYPATLFSNSAEGNASKKKNKRKQKEKKAWKDKPANMYPEDENLF
SIKQRKTKRTR
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgttctcggagtatcctgagggtgaggagtacgaggatgacctctactgtgacagtgat
gaggactctgggctctctgcagacagtgatgttgaaagatatctttattcccagctgcat
tatgcatcttgcccaacggatacatctcaggcttccatttcaacgccaaagatccaacct
caggtggcagagcctctggtggggaataaaaagcgcacacaaccacaacctcgacctcca
gaggtcatagtcattgactctgggtctgatatcatcctaggctcagatgacgatggaatc
tgttcttataaagggtcaagggcacatctccaccggaagactccaaccaccatgagaaca
tcctccagtgcatctggtacaagctctgcctccaaaggcctgagctcaaggcctgcgcag
gtagtagtgctgggatcggatgacagttcagaggacagctccgagggggactctgagcag
agctccgagagatcagaggacgctggcagacaaaaagggaacaaagctgttgatttaagg
tctgattcagactcggatgattcagactcagattcagacggactggagaaatggatgctt
ctgggccaggacaaccataatgaagaccaaagcattcaacttaacgtgtcgggaactgat
gttacagatgaccaggatagtgcagtttggacgatttcacaaagagacaaattggctcag
atctcaaatagcagaggaaacagactggctagtaggccagccaaacgctactacacagag
aagaatgttgtctgcaacaactgccagtgcactggtcacttgtccaagagctgtcccaga
ccacagaaactgcatccctgtttgcactgtggtctcctcgggcacctctaccgaacctgt
ccctccgtgtactgcagaaactgtgccctgccgggacacactccagacgtctgccctgag
cagtcctactggttcaagcactgccaccgctgcaacatgaagggccacttccaagatgcc
tgcccacagatatggaggcagttccatatcacaactcatgctggtcccctgtgtaaacct
gcagacccacaggcacactcaactactccctactgttgcaactgctcccagaagggccac
tttggtttcgagtgctcccagaggcggatgtttagtgggatctatcccagcctcccattc
actgatcactatgataggcctaaagactttaaacgccgtgacaacttcctaaagaagaaa
gccaaagatttggaggaggctggactgcttgtgttgggccctacccatgaaacagaagct
acaggattctcctcacccctatataagaaacagaagacccataaccacccacaacacaag
aataagtctccacacaagaactttcagcagggtagctctaaacagaaaaacccttacctc
gaaagaactatacacaagaaaaataatccgaaaacctctctgagcataaaacctaagcac
ctcttctttgggaagaaccgcaccccgcgagacagagacgcagccacagccccagcccca
gcgtgcaacaaccagaccaagccaaagaaacagaggaaagcccataggaatggcctgctg
gaggacggggaagactttcctcggggaccacgggattggacccccaactaccccgccacg
cttttctccaactccgctgagggcaatgcctctaagaaaaagaacaagaggaaacagaag
gagaagaaggcctggaaggacaaacctgccaacatgtaccctgaagacgagaacctgttt
tcaatcaaacagaggaaaaccaaacgcacaagataa
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