Clupea harengus (Atlantic herring): 105903560
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Entry
105903560 CDS
T09045
Symbol
lrba
Name
(RefSeq) lipopolysaccharide-responsive and beige-like anchor protein isoform X1
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105903560 (lrba)
Membrane trafficking [BR:
char04131
]
Endosome - Lysosome transport
Others
Others
105903560 (lrba)
Endosome - Golgi transport
105903560 (lrba)
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
105903560 (lrba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
Laminin_G_3
WD40
Neurobeachin
WD40_Prp19
Beta-prop_EML_2
Beta-prop_WDR75_1st
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EML
KNTC1_N
Beta-prop_WDR90_POC16_2nd
EIF3I
Extensin_1
SUKH_6
Motif
Other DBs
NCBI-GeneID:
105903560
NCBI-ProteinID:
XP_031416108
Ensembl:
ENSCHAG00000011618
UniProt:
A0A6P8EV92
LinkDB
All DBs
Position
22:complement(6559416..6752885)
Genome browser
AA seq
3081 aa
AA seq
DB search
MASEETPSASQTGDTGKDERVATMSLNPGIPIRGIRMKFAVLAGLVDVGEVSNRDIVETV
FNLLVGGPFDLEMNFIIQEAPSIGCMVELLDKCDPTCQAEVWSIFTAILKKSVRNLQACT
EVALIQQVLDRVDKTDSMIADLMVDMLGVLASYSITVKELKLYFSKLQGAKGQWPPHAVK
LLSVLKSMAHRNGPDSFFSFPGKSAAAIALPPIAKWPYQNGFTFHTWIRVDPLNNINVDK
DKPYLYCFRTNKGLGYSAHFVGGCLIITSLKSKGKGFQHCVKYDFKPQKWYMVTIVHVYN
RWKNSEISCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQMGAVYLFSE
ALSAAQILAIYQLGPGYKGTFKFKAESDLLFAEHHKMLLYDGKLSSSIALTYNPRATDAQ
LCLESSPKDNASIFVHSPHALMLQDVKAVVTHSVQSAIHSIGGVQVLFPLFAQLDFLQPT
SDEPSSSICCTLLSFVMELLKNSVAMQEQVLACKGFLVIGYTLEKSSKVHVTRPVLDILL
AFARYLSNLQNGVPLLKQLCDHILFNPTIWIHAPAKVQLMLYTYLATEFISTVTIYNAIR
RVGTVLQVMHTLKYFYWVVNPQDRSGVTPKGLDGPRPTQKEIHSLRAFLLLFVKQLIMKD
YGVKEDELQSILNYLLTMHEDDNLMDVLQLLVALMSEHPSSMVQAFDQRNGIRVIYKLLA
SKSEGIRVQTLKVMGYFLKHLPPKRKSEVMLSHGLFSLLTERLMLHSNQFSITTYNVLFE
ILTEQICTQVIHKQHPDPDSSVKIQNPQILKVIAALLKTSSTGPESMEVRRIFLSDMIKL
FNNSRENRRSLLQCSVWQDWMLSLCYINPKNSEEQKITEMVYAIFRILLYHAIKYEWGGW
RVWVDTLSITHSKVTFEQHKDNLAQMFQEYQRLGSDGGSETGIRTVSGASRESELLSHSN
GELDPLEQEEIAPSTVIELCVDEPPPSLPTPAKNMGRDGEKAKNKGGEGEKDEDRSLASV
AVSNILLRAEEEEKQEEEEHRAQQQDNQASAKQAREEERQGEAEAPDEQVNENNTGTSAN
HVPAAMEEECRDGETEPKEEHETGPEERAESGDGKKAEEVGIERETAEAFEGSTEETKVE
GTNDVKQTEGEGDVQKEPGVAEENRSQNEDPDSRETDKDTTIGLLREDSAEQGNSEVSNY
HETSTAGASGFSEDLEDVSSVSDALKASDDESSFVSASANAGDDDGDRDDENEDEVQNKA
TESDTRPPGAQAEGVSTNENEEMKESNERSIDQERVDKEAQPTTVNTEGPNTTPVTSEGP
SEEPLEPEGPTTGPVASEGPSTEPGTSEGPGAESELVKSEGSTAEPVTSEGPTAEPVTSE
RPTAEPVTSEGPNAEPVTSEGPTAEPVTSEGPTAEPVTSERPTAEPVTSEGPNAEPVTSE
GPTAEPVTSEGLIGEKDQTSTASTGEGSSGDAQKPAAEPVKEQADSTAAKTKEIKIARLD
VSSVATDTERLELKETTTSEASQAPAAASGPAPTSRDSASSSARSTMFRIPEYKWSHMHQ
RLLTDLLFSIETDVQMWRSHSTKTVMDFVNSSENVVFVHNTVHLISQVLDNLIMACGGIL
PLLSAATSSSHELENIEPSQGLAVEASVTFLQRLISLVDVLIFASSLSFTEIEAEKNMSS
GGILRQCLRLVCAMAVRNCLECQQHGQPVSDSGRTHKPTQGLSGAARSMPAQSPVDMVTG
GMSPVRDIDRLLQDMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQ
NDKRPVQHSQSTRSTESISSGLDLESNVSLRRRDSGIGDEQASVTPSSSQGPDAVSEALS
TLSLEVRKGQEGAGEREAKGKNVKDILRSLVSAPADEMMVDPSLLPPAFLGAMGGDGVRD
QGFKFHSFDRSVVVAPKKVGGAPSPASVSTAVSNLSASAAGGAPVNDVAVVSSSDTTQSA
SAESATAVADPGSANLPSVPALSPASQHTTPSMSISERLENALEKAAPLLREIFVDFAPF
LSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEG
RLLSHTMKDHLVRVANEAEFILSRQRAEDIHKHAEFESNCAQYAAEKRDEEKMCDHLIRA
AKYRDHVTATQLIQKIVNILTDKHGAWGSSSASRPRDFWRLDYWEDDLRRRRRFIRNPYG
STHSEATLKAAAEHVAGRAAPEEDVLKGKQSIRSQALGNQNSESEILLDGDDDTLSSLEE
KELENLTGPVNLSTGAQLVAPAVVVKGTLSITASEVYFEVDEEEPSFKKIDPKILAYTEG
LHGKWLFTEIRAIFSRRYLLQNTSLEIFMANRTAVMFNFPDVATVKKVVHCLPRVGVGTN
FGLPQTRRISLASPKQLYKASSMTQRWQRREISNFEYLMFLNTISGRTFNDLNQYPVFPW
VITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFSDRYESWEDEQIPKFHYGTHYSTS
SFTQMWLLRIEPFTTFFLNFQGGKFDHADRTFSSVSRAWRNCQRDTSDVKELVPEFYYLP
EMFVNSNNYNLGVMDEGSAVSDVELPPWAKDPEEFVRINRLALESEFVSCQLHHWIDLIF
GYKQQGPEAVRALNVFYYLTYEGAVNLSSISDPMLREAVESQIRSFGQTPYQLLIEPHPP
RSSAMQVYLLLQTPLMFTEQMQQDVIMVLKFPSNSPVCHVAANTQPGLANPSIITVTANR
LFSVNKWHGLTGHQGSSVQDQQYQLPVEIDPLIASNMGIHRRQISDLLDQSIQVHSQCFT
VTADNRFILLCGFWDKSFRVYSTDSGKLSQIVFGHRDVVTCLARSESYIGGDCYVLSGSR
DATLLLWYWNGKHNSIGENPGKEFVTPRAILTGHDCEVTCASVCAELGLVISGCAEGPCL
IHSMNGDLLRTLGGLEGCVRPRLVQASTEGHCVVYYDKGHLCLFSVNGKLLAHRHLEENV
KAMMLSKDGQYLLSGGDAGVLSVWQVHDMKQLFTYPGCDAGIRSMAMSHDQRCIITGMAS
GSIVLFYNDFNRWHHEYQTRY
NT seq
9246 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcgaggagacaccgtctgcttcacaaactggtgacaccggcaaggacgagaga
gtggcaacaatgtcgctcaatcctggaattcctatcaggggaatacggatgaaatttgct
gtccttgcgggcctggtggacgttggggaagtttcgaaccgggacattgtggaaaccgtc
ttcaatctgctggtgggaggtccctttgacctggagatgaacttcatcatccaggaggcc
ccgagcattggctgcatggtggagctgctggacaagtgtgaccctacgtgccaagcagag
gtgtggagcatcttcaccgccattttgaagaagagtgtgcgtaacctgcaggcctgcact
gaagtggccctcatccagcaggtcctggaccgcgtggacaaaactgatagcatgattgca
gatctgatggtggatatgctgggtgttctggccagctacagcatcacggtgaaggaactc
aaactgtacttcagcaaactgcaaggagcaaaaggccaatggcccccccatgctgtgaag
ctgctgtctgtgctgaagtccatggctcacagaaatggcccagactccttcttcagcttt
ccaggaaagagtgctgcggccattgccctgccccccatagcaaaatggccttaccagaat
ggtttcaccttccacacatggatacgtgtggaccctctcaacaacatcaatgtggacaaa
gacaagccttacctctactgctttcggaccaacaaaggcctaggctactctgcacacttc
gtgggcggctgtcttatcatcacctcattaaagtccaaagggaagggcttccagcactgc
gtcaaatatgacttcaagccccagaagtggtacatggtgacgatcgtccacgtctacaac
cgctggaagaacagtgaaatcagctgttatgtcaacggggaactggcttcctatggagag
atcacctggtttgtcaacaccagtgatacctttgataagtgtttcctgggctcctctgag
acggcggatgccaaccgcgtgttctgtggtcagatgggggccgtgtatctcttcagcgag
gccctgagtgctgcccagatcctggccatctaccagctgggccccggctacaagggcacc
ttcaagttcaaggctgagagcgatctgttgtttgcggagcatcataagatgctgctgtat
gacggcaagctgtcatccagcatcgccctcacctacaacccccgcgcgaccgacgctcag
ctctgtctggagtcctcgcccaaagacaacgcctccatcttcgtccactcaccccacgcc
ctcatgctgcaggatgtgaaggcagtggtcacgcactctgtgcagagtgccatccactcc
atagggggtgtgcaggtgctcttccccctgtttgcacagctggacttcctccagccgacc
agcgatgagcccagttcatctatctgttgcaccctgttgtcatttgtaatggagctgctg
aagaactctgtggctatgcaagagcaggtgctggcctgtaagggcttcctggtgattggc
tacactctggagaagtcttccaaagttcatgtgactcgaccggttttggacatactgctg
gcctttgcacgttaccttagcaacctgcagaatggtgtcccactgctgaaacagctgtgt
gaccacatcctgttcaaccctactatatggatccacgctcctgccaaggtacagctgatg
ctctacacttacctggcaacagagttcatcagtactgtgaccatctataatgccattcgg
cgagtgggcaccgtgctgcaggtgatgcacacactcaagtacttctactgggtggtgaat
ccccaggaccgcagcggggtcacacccaaaggcctggatggccccagacccactcagaag
gagatccactctctaagagcattcctgctactgtttgtcaagcagctaatcatgaaggat
tatggggtaaaggaggatgaactccaaagtattctgaactatcttctcaccatgcatgag
gatgacaatctgatggatgtgctgcagcttctagtagctctgatgtcagagcatcctagc
tctatggtccaggcattcgaccagcgcaatggaatacgagtcatttacaagctcctggca
tcgaagagtgaaggcatccgtgtgcagacgctcaaagtcatgggctacttcctgaagcat
ctgccaccaaagaggaagtcggaggtgatgctcagccatgggctcttctccctgctcaca
gagaggctcatgctccactccaaccagttcagcatcaccacctacaatgtgctttttgag
attttgactgagcagatctgtacccaagtgatccacaaacagcatccagacccggactcc
tctgtgaagatccagaatcctcagatcttgaaggtgattgcggctctgctgaaaacctcg
tccactggcccagagagcatggaggtgcgccgcatcttcctgtctgacatgatcaagctg
ttcaacaacagcagagaaaacagaaggagcctgctgcagtgctcggtgtggcaggactgg
atgttgtctctctgctacattaacccgaagaacagtgaggaacaaaaaatcactgagatg
gtgtacgccattttccggatccttctctatcacgccattaagtacgagtggggaggctgg
agggtgtgggtggatacactgtccatcactcattcaaaggtcacctttgagcaacacaag
gacaacctggcccaaatgttccaggagtaccagagacttggctctgatggtggttctgag
accggaatccggacagtatctggggccagtcgtgagtctgagcttctgagccattcaaat
ggggaactggatcccctggagcaagaggagattgctccgtccacagtgatcgagctctgt
gtggatgagcctcccccttctctccccactcctgctaagaatatgggaagagatggagaa
aaagctaagaataaggggggagaaggagaaaaagatgaagacagaagtcttgcatctgtt
gctgtgtcaaacatcttgcttcgagctgaagaagaagagaagcaggaggaggaggagcac
agagctcaacagcaggacaatcaagctagtgcaaaacaagcaagagaggaagaacgtcag
ggtgaagcagaggcaccagatgagcaagtcaatgaaaataacacagggacatctgccaat
catgtacctgctgctatggaggaggaatgcagagatggcgagactgaaccaaaagaggag
catgagactggaccagaagaaagagctgagagtggagatggaaagaaagctgaagaggtt
ggaatagaaagggaaacggctgaagcctttgagggcagtactgaagaaacaaaggtagaa
ggaacaaacgatgtgaaacagactgaaggcgaaggggatgttcagaaggagcctggggtt
gctgaagagaacaggagccaaaatgaagaccctgattcaagagagactgataaggacaca
acaattggtctgttgagggaagactccgcagagcagggaaactctgaagtttccaactac
cacgagacgagtacagctggtgcatcaggcttcagtgaagacttggaagatgtctcttct
gtcagcgatgcgctcaaggcaagtgatgatgagtcatcttttgtttctgccagtgctaac
gcaggggatgatgatggggatagggatgatgagaatgaggatgaagtacagaataaggca
acagagtctgacaccagaccaccaggtgcacaagcagagggtgtctctaccaatgaaaat
gaagaaatgaaagaaagcaatgagaggtctatagaccaggaacgagtggacaaggaggct
cagccaaccactgtgaatactgagggccccaacacaacgcctgtgacttcagaagggccc
agtgaagagccattggaaccagaggggcccactacaggaccagtggcatctgaaggtcct
agtacagaaccagggacatcagagggtcctggtgcagaatcagaactagtaaaatcagaa
ggatccactgcagaaccagtgacatcagaaggacccactgcagaaccagtgacatcagaa
agacccactgcagaaccagtgacatcagaagggcccaatgcagaaccagtgacatcagaa
gggcccactgcagaaccagtgacatcagaagggcccactgcagaaccagtgacatcagaa
agacccactgcagaaccagtgacatcagaagggcccaatgcagaaccagtgacatcagaa
gggcccactgcagaaccagtgacatcagaagggcttattggggagaaagaccagacatct
acagcgagcaccggggagggaagcagtggtgatgcacagaaaccagctgcagagcctgtg
aaggagcaagcagatagcactgctgccaagaccaaagaaatcaaaatcgctcgtctggat
gtgtcaagtgtagctacagacacagagagactggaactgaaggagactactacatcggag
gcgagtcaggccccggcggctgcatcgggtcctgccccaacgagtagagacagcgcatca
tcctcggcccgttccaccatgttccgtatcccagaatacaaatggtcccacatgcaccag
agacttctgactgacctgctcttctccatagagacagatgtgcagatgtggcggagccac
tccaccaagacagtgatggactttgtcaacagcagtgaaaatgtggtgtttgtacacaac
acggtgcacctcatctcccaggtgctggacaacctcattatggcctgcggtgggatcctg
cctctgctctccgctgccacctcttcctcgcatgagctggagaacatcgagccgtctcag
gggctggcggtggaggcctccgtcaccttcctgcagcggctgatcagcctggtggacgtg
ctcatcttcgccagctccctcagcttcacagagatcgaggctgagaagaacatgtcctcc
ggcggcatcctcagacagtgccttcgactcgtgtgtgccatggccgtgcggaactgtctg
gagtgtcagcagcacggtcagcctgtctcggacagcggccgcactcacaaacccacgcaa
ggcctctcgggagccgccagatctatgcctgctcagagtccagtggatatggtgactgga
gggatgtctcctgtcagagacatcgaccgactcctgcaggacatggacataaaccgcctg
cgagcggtggttttcagagacattgaggacagtaagcaggcccagtttttggcgttggct
gtagtttacttcatctcggtgctaatggtgtctaaataccgggacattttggagcctcaa
aatgacaaaagacctgtccagcacagccagtccaccaggagcacagagagcatctcttct
ggtctggacctggagagcaatgtgtcgctccgccggcgggactcgggcataggggatgag
caagcctccgtgacccccagcagctcgcagggtcccgacgccgtctcagaggctctgtcc
acgctgtccctggaggtcaggaaaggtcaggagggagctggcgagcgcgaggccaagggc
aagaacgtgaaggacatcctgcgcagcctggtgagcgcgcctgctgatgagatgatggtg
gaccccagcctactgcctccagccttcctcggggctatgggaggagatggcgtccgggac
cagggtttcaagttccactcctttgacaggagtgttgtagtagcacctaagaaggtggga
ggagctccatctccagccagtgtctcaactgctgtgtccaacctatcagcctctgcagca
ggtggggcccctgtcaacgatgtggccgtggtgtccagcagtgacactacccagagtgct
tcagcggagtctgccacagcagtagctgatcctggaagcgccaacctgccatctgtccct
gcgctgtccccagccagccaacacaccacccctagcatgagtatatctgagagacttgag
aatgctttggagaaagctgcaccgttgctgcgggagatctttgtggactttgccccgttc
ctgtctcgcacgctgctaggcagccatgggcaggagctgctcatagagggcacaagtttg
gtgtgtatgaagtctagcagttctgtcgtggagctggtgatgctactgtgttcacaggag
tggcagaactcgatccagaagaatgcgggcctggcttttattgagcttgtcaacgagggc
aggttactaagccatactatgaaggaccacctggttcgtgtggccaacgaggctgagttc
atcctgagcagacagagagcagaagacatccacaaacacgctgagtttgagtcaaactgt
gcccagtatgccgctgagaagcgtgatgaggagaagatgtgtgaccaccttatccgagcc
gccaaataccgcgaccacgtcaccgccacccagctgatccagaagatcgtcaacattctc
accgacaaacacggagcctggggaagctcctcagccagccggcctcgggacttctggcgc
cttgactactgggaagatgacctgaggagaagaaggcgcttcatcaggaacccctatggc
tccacacactctgaggccacgctcaaggctgcagccgagcacgtggctggcagggccgct
cctgaagaagacgtcctcaaaggcaaacagtccatcagaagtcaggcgctgggtaatcaa
aactcggagagcgagatactgctggatggtgatgatgacacgctgtcatctttggaggag
aaggagttggagaacctcacaggccctgtgaacctgagcaccggggctcagctggtcgcg
ccagccgttgtggtgaagggaaccctgtccatcactgcctcggaagtgtactttgaggtg
gatgaggaagagccgagctttaagaaaatcgatcccaagattctggcctacaccgagggg
cttcatggaaaatggctgttcaccgagatccgggccatattctcccgccgctacctcctg
cagaacacgtcgctggagatcttcatggccaacaggacggcggttatgttcaacttcccc
gacgtggccaccgtgaagaaggtggtgcattgtcttccccgtgtgggagtgggcacgaac
tttggcctcccacagaccaggcggatctctttagcgagtcctaagcagctgtataaggcc
tccagcatgactcaacgatggcaacgcagggagatctccaactttgagtacctcatgttc
ctcaacactatctctggtcgcacgtttaatgacctgaaccagtaccctgtgttcccctgg
gtcatcacaaactacgagtctgaggagctggacctcacgctgcctagcaacttcagagat
ctgtccaagccaatcggagccctaaacccaaagagagcagcctttttctctgaccgctat
gaatcatgggaggacgagcagattccgaagtttcactacggcacccattactccacctcc
agcttcacacagatgtggctgctgcgcatcgagccattcacaacgtttttcctcaacttc
caaggagggaagtttgaccacgcagaccgcacgttctcctcagtgtccagggcctggagg
aactgccagagagacacctctgacgtcaaggagttggtcccagaattttattatctccca
gagatgtttgtcaactccaataactacaacctgggtgtgatggatgaagggtctgcagta
tcagacgtggagctgccaccgtgggccaaggacccagaggagtttgtgcgcatcaaccga
ctggctctggagagtgagtttgtgtcctgccagctgcaccactggatcgatctcatcttc
ggctacaagcagcagggccctgaggctgtgcgggcgctcaacgtcttctactacctgacc
tacgagggagcggtcaacctcagctccatcagtgaccccatgctcagagaggcggttgaa
tctcagatcaggagctttggacagacaccctaccagctgcttatagagccacacccacca
aggagctcggccatgcaggtgtatctcctcctgcagacgccgctgatgttcacagagcag
atgcagcaggacgtcatcatggtgctcaagttcccctccaactcccccgtctgccatgtg
gcggccaacacccagcccggcctggccaacccctccatcatcaccgtcactgccaaccgc
ctcttctccgtcaacaagtggcacggtctcacgggtcatcaaggttcttctgttcaagat
cagcaataccagctgccggtggagatcgacccgctgatagccagtaacatggggattcac
cgcaggcagatctctgacctgctggaccagagcatacaggtgcactcccagtgcttcacg
gtcaccgctgacaaccgcttcatcctgctctgcggtttctgggacaagagcttccgcgtc
tactccactgactcagggaaactttctcagatcgtgtttggccatcgggacgtggtgacg
tgtctggcgcgctccgagtcgtacatcggcggcgactgctacgtgctgtctggctccagg
gacgccaccctgctgctctggtactggaatggcaaacacaacagcatcggagaaaacccc
ggaaaagagtttgtgacgccccgggccatcctgacgggacatgactgcgaggtgacgtgt
gcgagtgtgtgtgcagagctgggcctggtcatcagtggctgtgcagagggcccgtgcctg
atccactccatgaacggggacctgctccgcaccctgggcggcctggagggctgtgtgcgg
ccccggctggtgcaggcctccaccgagggccactgtgtggtctactacgacaagggccac
ctctgcctcttcagcgtcaacggcaaactactggcccacaggcacctggaggagaatgtg
aaggccatgatgctgagtaaggatggccagtacctcctgagtgggggagatgcaggagtc
ctgagcgtgtggcaggtgcacgacatgaagcagctcttcacctacccaggatgtgacgca
ggcatccgctccatggccatgtcccatgaccagaggtgcattataacaggcatggcgtct
ggcagcatcgtactgttctataacgacttcaacaggtggcaccatgagtaccagactcgt
tactga
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integrated database retrieval system
