Clupea harengus (Atlantic herring): 105903713
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Entry
105903713 CDS
T09045
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105903713 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105903713 (polr1a)
Enzymes [BR:
char01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105903713 (polr1a)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
105903713 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
105903713
NCBI-ProteinID:
XP_031442747
Ensembl:
ENSCHAG00000021078
UniProt:
A0A6P8H4Z8
LinkDB
All DBs
Position
20:complement(10515617..10538370)
Genome browser
AA seq
1690 aa
AA seq
DB search
MLFAKELPWRRLEGMSFGLYSSDEIRKLSVKTITNHQILDNVGNPAFNGLYDLSLGPSDN
KEVCSTCMQDYINCPGHFGHVELPLPVFNPLFFDKLYLLIRGSCLACHILSCARAPIHLL
LNQLKLLDVGALQDVYELENFLNQFLETSPQASGADIQAVLEEHCAPILKALKDGEERYT
PIKHVCEKKASLVQNFWRVHMTPKRCSSCKTPRAAVRREHNSKLIITNAPSKKPEVEEDA
QIAKRGYLTPSLAKEHIVKLWEKEGFFLKHLFAGMDEGLQAVFKPDIFFLDILMVPPSRY
RPINRLGDQMFTNGQTVNMQAVMKDNNSIQKLLALIAAEKAKEIEGSDTELDKDTMETEE
KGKMDQTFLSGIPGQTLTDKLYNMWIRLQSHVNIVFDSDMDKLMSEKFPGIRQLLEKKDG
LFRKHMMGKRVDFAARSVICPDMYIGTHEIGIPMVFATKLTYPQPVTPWNVKELRQAVLN
GPNVHPGASMVINEDGSRTILSSSNLTQREAIAKQLLTPSTGPHRVPMKIVNRHIKNGDV
MLLNRQPTLHRPSIQAHSARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELARAE
AYTLVSTNQQYLVPKDGKPLAGLIQDHMVSGTTMTIRGCFFTRDQYTALVYRGLTDKVGR
VKLLRPAILKPYPLWTGKQLVSTLLLNVIPENHIALNLTGKAKIPSKAWIKVPPRPVNGY
RPDTMSDSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGNLLTCLARLFTA
YLQLYRGFTMGVEDILVKPGANIERTMIIEESVTVGTKALKAAFSLLPTATEEEGRDHWQ
NAHLNPDQRDFNMVDLKFKEQVNQVNNNINKVIMPIGLHRSFPENNLQLMVQSGAKGSTV
NTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDSAPRSGGFISGRFLTGIKPPEFFFH
CMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIP
KTPFLQQGQFPFIKDNYEVIRKSKCLDEVLSKMDSSVSAKHQKAIKKWMEKRAEAAPRDG
GFLLFSQKKLPKIKAHNEGACLANGREKATLELVERWSALDMANRKKYLKKTSRCPDPCL
AVHRPDISFGSVSETFEAIVESYLTKLESGQDCNTSDEVDGDRLRKLLQQKWQRALCDPG
EAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSKIKTPMMSIPV
LNTKKALKRVKTLKKKLNRVCLAEVLHKVDVEETLRFEGKQAQKKDRVFKLSFHFLPPER
YQQDKMLTPQQILRYMEARFFRLLLEAIKKLNAKLASIDPVETRKATRKDEDQVGGETSG
PAQEDGDANAEEEMRIVDDEADEGDADASDAKRKGKQEEEVDYDSEEGSEGDEGEDLEEE
PEEESRDAPADSPPTEEPDQLAETEIQDQMRVNAVLAIGKAVENYKYDSLNGLWCEATIV
LPVTNVHFDLTSLVVTQAQNAVIMETKGITRCLLGEVTTKDGAKETVLNTEGINMPEIFK
HGDILDLNRLYSNEVHAIANTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADYMCF
EGVYKPLNRFGIRSNSSPLQQMTFETSYKFLKDATMLGSHDQLRSPSACIVVGKVVKGGT
GIFDLKQPLQ
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgctttttgcaaaggaactaccatggaggcgcctcgagggcatgtcgtttgggttgtac
tcatccgatgaaataagaaaattgagtgtaaaaaccatcacgaatcaccagattctggat
aatgttggcaaccctgcctttaatggcctgtatgatctttcactcgggccctcggacaat
aaagaagtgtgctcaacctgcatgcaggactacatcaactgccctggccactttggacac
gttgaactacctttgcctgtcttcaaccctctattctttgataaactctacctgctcatc
cgaggctcttgtttagcttgccacatcctcagctgtgccagggctccaattcacctcctg
cttaaccagctgaagctgctggatgttggtgctctgcaagatgtctatgaactggagaat
tttctcaatcagtttttggaaaccagtccacaagcttctggtgcagatattcaggcggtc
ttagaggaacactgtgcaccaattctgaaagccctcaaagatggggaggagcgttacact
ccaattaagcatgtctgcgagaagaaagccagccttgttcaaaatttctggagagttcac
atgacaccaaagcgatgctcgagctgcaagacacccagagcagcggtgcggcgagaacac
aacagcaaactcatcatcacaaatgccccctccaagaagccagaggtcgaagaggacgct
cagattgccaagcggggataccttacccccagcttggctaaggagcacatcgttaaactt
tgggaaaaggaaggcttcttcctgaagcacctgttcgctggtatggatgagggcttacaa
gccgtcttcaaaccagatattttcttccttgacattctgatggttccaccgagtaggtac
cggcccatcaaccgcctgggagaccagatgttcaccaacgggcagacagtgaacatgcag
gccgtgatgaaggacaacaactctattcagaagctgctggccctcatagctgcagagaaa
gcaaaggagatcgaaggcagtgacacggagttggacaaggacacaatggagacagaggag
aaaggtaaaatggaccagacgtttctgtccggcatacctggtcagacgctcacagacaag
ctgtacaacatgtggatcaggctgcagagccacgtcaacattgtgtttgacagcgacatg
gataagctgatgagcgagaagttccctggcattcggcagcttctggagaagaaagacggt
ctattcaggaagcacatgatggggaagcgcgtggacttcgctgcccgttccgtcatctgt
ccagacatgtacatcggcacccatgagatcggcatccccatggtgtttgccaccaagctg
acgtacccccagcccgtgactccgtggaacgtgaaggagcttcggcaggcggtgctgaac
ggacccaacgtgcacccgggcgcgtccatggtgatcaacgaggacggctcgcgcaccatc
ctgagcagcagcaacctgactcagcgcgaggccatcgccaagcagctgctcacgcccagc
acaggcccccacagggtgcccatgaagatcgtaaaccggcacataaagaacggggatgtt
atgctcctgaaccgccagcccaccctccacaggccctccatccaggcccactcggcccgg
atcctgcccggcgagaaggtcctgcggctgcactacgccaactgcaaggcctacaacgcc
gacttcgacggcgacgagatgaacgcccacttccctcagagtgagctggccagggccgag
gcctacacgctcgtcagcacaaaccagcagtacctggtgcccaaggatgggaagcctctg
gctggtctgatccaggaccacatggtgtctggcaccacaatgaccatcagaggctgcttc
ttcaccagggaccagtacacagcactggtctacaggggcctcacagacaaagtgggcaga
gtcaagctgctccgccctgccatcctcaaaccctaccccttatggacgggcaaacagctt
gtgtccaccctgctcttgaacgtcatccctgagaaccacattgccctgaatttgactggc
aaagccaagatccccagcaaagcctggataaaagtgcctcctcgtcctgtgaatggatac
cgccctgacaccatgagtgactctcaggtggtcatccgccagggggagctgttggtcggg
gttctggacaaggctcactacggcagctcggcctacggcctggtgcactgctgctacgag
ctgtacggcggggagaccagcggcaatctcctcacctgtttggcacgcctcttcaccgcc
tacctgcagctgtaccgcggcttcaccatgggagtggaggatattctagtcaaacctggc
gccaacatagagagaacaatgatcattgaagagtctgttacagttggaaccaaggctctg
aaagcagccttcagccttctccccactgcgactgaggaggaggggcgggaccattggcag
aatgcccacctgaacccagaccagagagacttcaacatggtggacctcaagttcaaggag
caggtcaaccaagtcaacaataacattaacaaggtgattatgcctattggccttcacagg
tccttcccagagaacaaccttcagctcatggtgcagtcaggggccaagggctccactgtt
aacaccatgcagatctcctgcctgctgggtcagattgagctggagggccgacgcccaccc
ctgatgccttctgggaaatctctgccctgtttccagccttatgacagtgcgccccggtca
gggggctttatttccggacgattcttgacggggattaagccaccagagttcttcttccat
tgcatggctgggcgtgaaggcctcgtggacactgctgtgaagaccagtagatcgggctac
ctgcaaaggtgtgtgatcaagcacctggagggtctggtggtccagtatgacttgactgtg
cgagacagtgacggcagtgtggtgcagttcctctacggggaggacggcctggacatcccc
aagactccgttcctccagcaggggcagttccccttcatcaaggacaattacgaggtcatc
aggaagtccaagtgcctggatgaagtcctgtccaagatggactctagtgtttcggccaag
caccagaaggccattaagaagtggatggaaaagcgggcagaggcagcaccccgggatgga
ggcttcctgctcttctcgcagaagaagctgcccaagattaaggctcacaatgaaggtgcc
tgtctggccaacggcagagagaaggccaccctggagctggttgagcggtggtcggcgctg
gatatggccaaccggaagaagtatctgaagaagacctctcgctgcccagacccctgcctg
gccgtgcaccgaccagacatctccttcggctccgtgtccgagaccttcgaggccatcgtg
gagtcctacctcaccaagttagagagtggccaggactgtaacacttccgatgaagtggat
ggcgacaggctgaggaaactgctgcagcagaagtggcagcgggcgctgtgtgaccccggt
gaggccgtgggtctcctggcggcccagagcatcggggaaccgtccacgcagatgaccctc
aacacctttcacttcgccggcagaggagagatgaacgtcaccctcggtatccccaggctg
cgtgagatcctgatgattgccagctccaaaatcaagactccaatgatgagcatccctgtc
ctgaacaccaagaaagccctcaagagggtgaagaccctgaagaagaaactcaacagagtg
tgcttggcagaggtcctccacaaggtggacgtggaggagacactgaggttcgagggaaaa
caggcccagaagaaggatcgagtgttcaagctttccttccacttcctgccaccggagcgc
taccagcaggacaagatgctcaccccacagcagatcctgcgctacatggaggccaggttc
ttcagactgctgttagaagctatcaagaagctcaatgccaagctagcctctatcgaccct
gttgaaacacgcaaagccacacggaaggatgaggaccaggtcgggggggagacgtctggt
cctgctcaggaagatggagatgcaaacgcagaggaagagatgaggatcgttgacgatgaa
gcagacgaaggagatgccgacgcctctgatgccaagaggaaagggaaacaggaagaggag
gtggattatgacagtgaagagggcagcgaaggggatgaaggagaggacctggaagaggaa
cctgaggaggagtccagggatgctccagccgattctcctcccacagaggagcccgaccag
ctggcagagacagagatccaggatcagatgcgggtgaatgcagtgttggccatcggcaaa
gcagtggagaactacaaatatgacagcttgaatggactctggtgtgaggcaaccattgtc
cttccagtcactaatgtgcactttgacctgacgtcactggtagtgacgcaggctcagaat
gccgtcatcatggagaccaaaggcatcacacgctgcttactaggcgaggtcaccacaaag
gacggtgccaaagagactgttctcaacacagagggcattaacatgccagagatcttcaag
catggcgatattcttgatttgaataggctgtactccaatgaagtccatgccattgccaac
acgtatggcattgaagtggctctacgagttattgaaaaggaaatcaaagacgtgtttgcc
gtttatggtattgaggtggaccccagacacctgtccctggtggctgactacatgtgcttc
gaaggtgtttacaagcccttgaaccggtttggcatcaggtccaactcctctcccctgcaa
cagatgacctttgaaacgagctacaagttcctcaaggatgccactatgttgggatcacat
gaccagctgcggtctccctctgcttgcatcgtggtcggaaaagtcgtcaaaggaggaacg
gggatctttgatttgaagcaaccactgcagtag
DBGET
integrated database retrieval system
