Clupea harengus (Atlantic herring): 105903871
Help
Entry
105903871 CDS
T09045
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03030
DNA replication
char03410
Base excision repair
char03420
Nucleotide excision repair
char03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
105903871 (rfc1)
03410 Base excision repair
105903871 (rfc1)
03420 Nucleotide excision repair
105903871 (rfc1)
03430 Mismatch repair
105903871 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
char03032
]
105903871 (rfc1)
03400 DNA repair and recombination proteins [BR:
char03400
]
105903871 (rfc1)
DNA replication proteins [BR:
char03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
105903871 (rfc1)
DNA repair and recombination proteins [BR:
char03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
105903871 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA
BRCT
AAA_22
PTCB-BRCT
AAA_30
AAA_5
AAA_7
Rad17
RuvB_N
AAA_33
AAA_14
AAA_17
BRCT_2
AAA_16
nSTAND3
RNA_helicase
RCF1-5-like_lid
NTPase_1
AAA_18
AAA_19
SKI
AAA_28
Motif
Other DBs
NCBI-GeneID:
105903871
NCBI-ProteinID:
XP_031416059
Ensembl:
ENSCHAG00000027684
UniProt:
A0A6P8EV43
LinkDB
All DBs
Position
22:complement(2535893..2545175)
Genome browser
AA seq
1178 aa
AA seq
DB search
MDIRRFFAPSKPAPPKAPSDSGIRTDEEQKLIKKKSVSKSSEEKLSGKRKKRAVIDSDSE
EEEKKQRKPKKERQKEKADPPVKTEKEKKGPIQYVSDSDSDDAFLSLKKPVENGLKKAGK
GAEKKTQKGLTKDSVKSPPKSLVKSPTIPKPKLTSPVRPKLLSPPKQTHTSVLDYFGSCS
VQRSDKKLVASVKRKAQTQDLDESQNDEVIATQLQMDEDMELEKQIHEDEEFARTLAMLD
EAPLAKKARKDSGEGPSSSSSISKLANRTDHVSHNQKLPSPTKAPKDSGDRPGPIPSPTK
QTIKMESQNQRQPTPKTTPKKASSKLASLKRRDEEQECIKKEEKEEKEEKKVFSPKKEPT
HSERAFTPKTGGASTRTGSAITPKTGSAGTPGSSKVSPKKPDTSPEDSEKRRGNSAAFRN
FLNRDGPRALGSKEIPVGAENCLEGLTFVVTGVLESIERDEAKTLIERYGGKVTGNISRK
TSYLVLGRDGGVSKTEKAESLGTQILDEDGLLELIRNKPGKKSKYEIAAETENKSVKSKT
KASPRTQTPRASPRTQTPRTSPRTKTPRTPQHTPSPRKARQLGAKGQKTPEKSVVKKVLT
FGQSSATEDSGSSLMWVDKYRPQSLKAVIGQQGEQSCASKLRRWLQSWYSNHSGDKPAAA
RFGRFGGKDDGATLKAALLSGPPGVGKTTTAALVCQELGYSYVEMNASCARSKNTLKEVI
AESLNNTSIKNFYSGTSQTVSRKHVLIMDEVDGMAGNEDRGGIQEMISLIKTSKIPIICM
CNDRNHQKIRSLANYCFDLRFQRPRLEQIKGAMMSICFKEGVKIPPPALNEIILASNQDV
RQVLHNLSMWSAKDKVMTYDQVKADANNARKDMKMGPFDVCRKVFASGDEAKQMSLMDKS
DLFFHDYSLAPLFVQENYVHVRPAAAGGNLKSHMVLLSKTADSICDGDLVDRQIRSKQTW
SLLPTQAVYASVLPGALMSGYMSQFPTFPSWLGKFSSTGKHSRIIQELASHMCLRTLSSK
QAVNLDYLPYMRSALLEPLQRAGAEGASQSVQLMDDYNLIKEDVDCIMEISTWGGRPDPY
SKLDPKVKAAFTRAYNKESHLTPYSLQAVKKGRRGGPEADLATQDGDNDNDSQQQEEEEE
EQGVDAMIKQKKAKPVKVKAEDSGKGKGKGKGRGKGKK
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggacattcgcagattttttgccccctcaaaaccagctcctcctaaagccccctcggac
agcggtatcaggacagatgaagaacagaagctcatcaaaaagaaatcagtgtccaagagc
tcagaggagaagctgtctggaaagaggaagaagagagcagtcatagactctgactctgag
gaagaggagaagaaacagaggaagccaaaaaaagaacggcagaaagagaaagcagacccc
ccagtaaagacagaaaaagagaagaaaggaccaatccagtatgtgtctgattcagattca
gatgatgcatttctctccttgaagaagccagtggagaatggccttaagaaggctgggaaa
ggtgccgagaagaaaacgcaaaagggtctcactaaagattcagtcaaatcaccccccaaa
tcacttgtcaagtcccctactatacccaagccaaaactcacatctccagtcaggcccaaa
ttattatccccacctaaacaaactcacacctcagtactggactactttggctcctgtagt
gtccagcgctcggataagaagcttgtggccagtgtcaaaaggaaagcacaaactcaggac
ctagatgagtctcagaatgatgaggtcattgcaacgcagctgcagatggacgaggatatg
gagttggaaaaacagattcatgaggacgaagagtttgcccgaactctagctatgctagat
gaggctccacttgctaaaaaggctcgtaaggattctggtgaggggcccagctccagctcc
tccatcagtaaactggcgaataggacagaccatgtaagccacaaccagaagctgccatca
cccacaaaggctcctaaggactctggggacagacccggtcccatcccctctcccaccaaa
cagaccatcaagatggaaagccagaaccagaggcagcccacacccaagaccacacccaag
aaggccagctccaaattggcctccttgaaacgcagggatgaggagcaggagtgcataaaa
aaggaggagaaggaggagaaggaggagaagaaggttttctcacccaaaaaagagcccact
cactccgagagagcattcacgcccaaaacaggaggtgcaagtactagaacaggaagtgct
attacaccgaaaacaggaagtgctggtacacctggttcaagcaaagtctctcctaaaaag
ccagataccagtccagaggattctgagaaacgccggggaaattctgctgccttccggaac
ttcctgaatagagacggtccacgtgcgcttggctccaaagagatccctgtgggtgctgag
aactgtctggagggcctgacatttgtggtcactggtgtgctggagtccattgaacgtgat
gaggcgaagactcttatagaacgctatggagggaaagtgactggaaatatcagcagaaag
accagttatctagtgttggggcgggatggcggagtttccaagactgagaaagcagaaagt
cttggcactcagatccttgatgaagatggtctactggagctaattcggaacaaacctgga
aaaaaatccaaatatgagattgctgctgaaacagagaataaaagcgtgaagagtaagacc
aaggcctcccctcgtacccagacccctagggcctctcctcgtacccagaccccgaggacc
tctcctcgtaccaagacccctaggaccccacagcacacacccagtcctcggaaggcccgc
cagctaggggccaaaggtcaaaaaacgccggaaaagtcagtggtgaagaaggtgctgacc
tttgggcagtcgtctgccacagaggattctgggagcagtctgatgtgggtggataagtac
cgccctcaaagcctgaaggctgtgattggtcagcagggtgagcagagttgtgcatctaaa
ctgcggcgctggctccagagctggtacagtaaccacagtggagacaaacctgcagcggcg
cgttttggtcgtttcggaggtaaagacgatggggcgactctcaaagcagcgttgctgtca
ggacctcctggtgttggaaaaacgaccacagccgctctcgtgtgtcaggagttgggttac
agttatgtggagatgaacgccagctgtgcgcgcagtaagaacactctgaaggaggtgatc
gccgagtctctgaacaacaccagcatcaagaacttctactcaggtacatctcaaacggtc
agcaggaaacatgtgctgatcatggatgaggtggatggcatggcgggaaatgaagaccga
gggggcattcaggagatgatttctttaataaagacctccaagatccccatcatctgcatg
tgtaacgaccgcaaccaccaaaaaatccgctcacttgccaactattgctttgacctgcgt
ttccagcggccacgcttggagcagattaagggtgcgatgatgtccatttgtttcaaagaa
ggcgtgaagatcccccctccagctctcaatgagattattttagcatccaatcaggatgtc
cgacaggtgctgcataatctcagtatgtggtcagccaaagacaaagtcatgacctatgac
caggttaaagcagacgccaacaacgccaggaaagacatgaaaatggggccctttgatgtg
tgccgaaaagtgtttgcatcgggagacgaggccaaacagatgagtttgatggataagtca
gacctgttcttccatgactattctctggcaccacttttcgtccaggagaattatgtacac
gtcagacctgcagctgcaggcggtaacctgaagagccacatggtgctgctgagcaaaact
gcagacagcatctgtgatggagacctggtggaccggcagatccgttccaaacagacctgg
tctctgctgcccacacaggccgtctacgccagcgtgctgcccggcgcgttaatgagcggc
tacatgagccagttccccacgttccccagctggctgggcaagttctcctccacggggaaa
cacagccgcatcatccaggagctggcgtcccacatgtgcctgaggaccctgagcagtaag
caggcggtgaatctggactacctgccctacatgcgctcggccctgctggagcctctgcag
agggccggagccgagggggccagccaatcagtgcagctcatggacgactacaacctcatc
aaagaggatgtggactgcattatggagataagcacatggggaggcagacctgacccctac
tccaaactcgaccccaaggtgaaagcggccttcacgcgggcctataacaaggagagccac
ttgaccccgtactcgctgcaggctgtgaagaagggcaggcgaggaggacctgaggcggac
ctagcgacgcaggatggcgacaacgacaacgactcacagcaacaggaggaagaggaggaa
gaacagggggttgatgccatgatcaagcagaagaaggctaagcccgtgaaagtgaaagca
gaggattctgggaaaggcaaaggcaagggcaaagggagaggaaaaggcaagaagtga
DBGET
integrated database retrieval system
