Clupea harengus (Atlantic herring): 105903970
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Entry
105903970 CDS
T09045
Symbol
atrx
Name
(RefSeq) transcriptional regulator ATRX isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
105903970 (atrx)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105903970 (atrx)
03036 Chromosome and associated proteins [BR:
char03036
]
105903970 (atrx)
Transcription factors [BR:
char03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
105903970 (atrx)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
105903970 (atrx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
SPT6_acidic
Motif
Other DBs
NCBI-GeneID:
105903970
NCBI-ProteinID:
XP_031413726
Ensembl:
ENSCHAG00000001593
UniProt:
A0A6P8EN19
LinkDB
All DBs
Position
20:complement(8901351..8954143)
Genome browser
AA seq
2118 aa
AA seq
DB search
MTTDIISIPASSGKLNTLVTKLHEYMSYSAEEDINEPQTSGKMASTESNTTDQIMEEPGS
STETAKASSSRSKRKPTTVTKHTGLDQSDESEQSDQEDCSIDNPADSNTEVTSLPKGTIV
VNPEPVDEESKDDFTGPEFRSRRSRGDPQRKRMENDISLLERVNCTACGQQVNHFQRDSI
LVHPILKVLICKSCYKYYMSDDISKDADDMDEQCRWCAEGGNLICCDYCSNAFCKKCILR
NLGRKELSGIMDESSKWYCYVCSPEPLVDLATGCSKVMQNLERLWCREHKPKTNKSDRKK
DKAAFNGKEHHSEGSGTLTFSPKLLQIPKELVKKTKKLIETTTGLNNTFVQFIQQASKDK
GTKPMLRYRHLKAFKSVLADLKMAHATLEHALEAEFRELELQNGAEAAVDHGPVEHRVVT
QTEPTGQNEQTDQIEPTGHTEQAEQAKVDEDQSNNAIDGSDCEDNADYMDIDAVEMKDSP
IRSPTKQLFNESEVREEEDEDEEEEEEEEDNVKPDGECGVQEDGNLLVEDSSEIDREILS
ATPSIPDELFQMVESLADSTKLAAADEAREAKVAELSPEEAQPTEAKEADEKPSGAQKRI
ATLGKKKLVVKLTPMPLRISLKAAVEPTKEDGDGSVTPEDGLKSRRSPRVKTTPLRKPSE
RKSKSNGKQDTDKKTKAKVKTTTTSGDQEEVAAAKVSSTQGDSDSDEVPLVLRQRALLEA
SSGDEVASSGKKAKDESLSKPAVRPSERRSTKRKLTPKATSSDSDQEAGAKKSAAKSVAK
SVSKKKKNASSDSENDDSDVEKEIKGLSKLGTVKKGRGKVKQESKETLEKVAKTKKRSFE
RTRRTKRGKVSASRSPSSSDHEEEEEQAEDSGEDSDDKQKMRPIMDSVMAGIDSFQQSSG
DEGGVKGEPPQMPDDDDDDPENRIAKKMLLAQIKATYSSGAESSSEHSDSEQEDGKPAKK
VKNESGEENGEEEDDEDSDADSDVDKKKSRRRHRLLKHKLSLSEGESEDEKAGKSGKKDK
GKKKSKRKVVSDDSADSNFEGSQSSSGSESALSEAVSDSEEEGNKRKTRSSKKAAKAKKE
RSYKQQKKKRRRIKVQDSSSAKSGEDEEGEEEDGSGSGSGSGSGSGSGSDKGTPKGRKKI
RKILKDDKLRSETVNALKEEEDRRKRIAEREALREKLREVRSVIVVEAASQMDCPITTKL
VLDEDEETKEPLVQVHRNLVTKLKPHQVDGVQFIWDCCVESVKKAKKTSGGSGCILAHCM
GLGKTLQVVTFLHTMLLCEKLNFSTALVVCPLNTVLNWKNEFEKWQDGLKDEESLEVIEL
ATVKRPQERAYTLQRWHEDGGVLIIGYEMYRNLTIGRSLKSKKLKETFQKTLVDPGPDFV
ICDEGHILKNEASAISKAMNNIKTRRRVVLTGTPLQNNLIEYHCMVNFIKENLLGSVKEF
RNRFINPMQNGQCADSTAVDVRLMKKRAHILYEMLAGCVQRRDYTALTKFLPPKHEYVLA
VRMTTIQAKLYRHYLDNFTSVGSAGNAMEGKGRAGTKLFQDFQMLSRIWTHPWCLQLDYI
KKENKGYFDEDSMEEFIASDTEESSMSLTSEDDAPKRKKARGKGKKKQSSEGSDSDDLEV
IKEWNTSSRGGNPESRNRAEPVEEARVPSTTFSPDWHKDFVTEADAEILAHSGKISLLFE
ILRMAEEMEEKVLVFSQSLISLDLIEDFLELSCRAKDEGKESPYKGEGKWFPNIDYYRLD
GSTGAMTRKKWAEDFNDTSNIRGRLFLISTRAGSLGINLVAANRVIIFDASWNPSYDIQS
IFRVYRFGQIRPVFVYRFLAQGTMEEKIYDRQVAKQSLSSRVVDQQQIERHFTMNELTEL
YTFEPELLDDPTSKKGKRSTPVLPKDTFLAELLHSFKDHLVGYHEHDSLLDHKEEEALSE
EDRKAAWAEYEAEKKGLSMRTNQQQMMGNSQSGYFHFNMAALSNMNNRELEDLVNQGRQK
VIETSNAINSLQGEPLEDVISRIWKDNPSLEEAQVQAMAMSQQATIERERQRIEVAYRDV
LHKQQTLMMYVQKVLNNRKVQEQQLAMAKQGLLMNQMALQNGMMGPGNLNQMELMGLYQH
LQQMQQGMGGNPGPSKGL
NT seq
6357 nt
NT seq
+upstream
nt +downstream
nt
atgactacggacatcatcagtatccctgctagttccggcaagctgaatacattggtgaca
aaactccatgagtacatgagttattctgcagaagaggatattaatgagccccaaacttct
ggtaaaatggcctctactgaatcaaacacaactgaccaaatcatggaagagcctgggagc
tccacagaaacagcaaaggcctcctcttcaagatctaagaggaaacccactactgtgacc
aagcacactggcctagatcagtcagacgaatctgagcagagtgatcaggaggattgctcc
atagacaatcctgctgacagcaacacggaagtgaccagtttgcctaaaggtactatagtg
gtcaaccctgagcctgtggatgaagaatctaaagatgacttcacaggcccagagttcaga
agcaggaggagcagaggagacccccaaaggaaacgtatggaaaatgatatttcacttctt
gaaagagtgaattgcacagcttgcggtcagcaagttaatcattttcagagggattctatc
ttggtgcatcccattttaaaagtccttatctgcaagtcatgttacaagtactacatgagt
gatgatatcagcaaagatgccgatgatatggatgagcagtgcaggtggtgtgctgaagga
ggaaacctaatctgttgtgactactgcagtaatgccttctgtaaaaagtgtattttacgc
aacctcggcaggaaagagctgtccgggatcatggacgaaagcagcaagtggtactgttac
gtttgcagccctgaaccactggtcgacttggccactgggtgtagtaaggtcatgcaaaac
cttgagcggttgtggtgtcgggaacacaagccaaagaccaataaatccgaccgcaagaag
gacaaagctgccttcaacgggaaggagcaccactcggagggctctggaaccttaacgttc
tctcccaagttgcttcagatcccaaaagaactggtgaaaaagacaaaaaagctcatagag
acgacaacaggcctgaacaacacgtttgtgcagttcattcagcaggcctctaaagacaag
gggaccaagcctatgttgcggtaccgccacctcaaagcgtttaagtcggtgctggctgac
ctgaaaatggcccacgccaccctggaacatgccttggaggccgagttcagagaactggag
cttcagaacggagcggaggctgcagtggatcatgggccagttgaacacagagtggtcacg
cagaccgagccgactgggcagaatgagcagactgaccagatcgagccgactgggcacacc
gagcaggccgagcaggccaaggtagatgaggaccagagtaacaatgccatagatgggtct
gactgtgaggataatgcagattatatggacatagacgctgtggagatgaaagacagtccc
attcgttcgcccactaagcagctctttaacgagagtgaggtcagggaggaggaggatgag
gatgaggaagaagaagaagaagaggaggacaatgtcaaacccgatggagaatgtggtgta
caggaagatgggaacttgctggtcgaagattcgtcagagattgacagggagatcctgtca
gctaccccctctatccccgatgaacttttccagatggttgaaagtctcgcggactccacc
aagcttgctgctgctgatgaggccagagaggccaaagttgcagaattgtcacctgaagag
gcccaacccacagaggccaaagaggcagacgaaaagccctctggggctcaaaaaaggata
gctacactgggcaaaaaaaagctggtggtgaagctgacgcccatgcctctcagaatcagc
ttgaaggcagcagtagagccgaccaaggaggatggggatggatctgtcactccggaagat
ggcctcaagagccggcgatctcccagagtaaagacgacgccccttcgcaaaccctctgag
agaaagagtaaaagcaacggcaagcaggacacagacaagaaaaccaaggccaaggtcaag
accacaacgacctccggtgaccaggaggaggtggcagcggccaaggtgtcgtccacccaa
ggggactctgactcagatgaagtccctttagtccttcgtcagagggcactgctggaggcc
agctcgggagacgaggttgcgtcttctggaaagaaggctaaagacgagagtctcagcaag
cctgcagtgcggccctctgagaggaggtcgaccaaacgcaagcttaccccgaaggccacc
tcgtccgactccgaccaagaagcgggagccaagaagagcgcggccaagagcgtggccaag
agcgtgagcaagaagaagaagaacgctagctcagactctgaaaatgatgactccgatgtg
gagaaggaaatcaagggtctgagcaagcttggcaccgtaaagaaaggacgtggtaaggtg
aaacaggaaagcaaagagacccttgagaaagttgccaaaacaaagaaaaggtcctttgaa
cgcacacgcaggaccaagagaggcaaggtcagcgccagccgatcaccctcatccagcgac
catgaggaggaggaggagcaggcagaggactctggtgaggacagcgacgacaagcaaaag
atgcggcccattatggactcggtgatggccggaatagacagtttccagcagtcgtcaggg
gacgaaggtggtgtcaaaggtgaaccccctcagatgcctgacgatgatgacgatgaccca
gagaatagaattgcgaagaaaatgctgcttgcacaaatcaaagccacttactcctctggg
gcggagagctcatcggagcacagcgactctgagcaggaagacggaaagccagccaagaag
gtcaagaacgaaagcggggaagagaacggagaggaggaagacgacgaggactccgatgca
gactctgacgtagataagaaaaagagccgccggcgccatcgcctgctcaagcacaagctg
tcgcttagcgagggcgaatcagaagacgagaaggcaggcaagagcgggaagaaggacaag
ggcaagaagaagagcaagaggaaagtggtcagcgatgactcggcggactctaactttgaa
ggttcacagtcgagctccggcagtgaatctgctcttagcgaggcagtcagtgattctgag
gaagaaggcaacaaacgaaaaaccagatcttccaagaaggccgccaaggcgaagaaggag
aggagctacaagcagcagaagaaaaagcgccgccgcatcaaagtccaggactcctccagt
gctaagagtggggaggatgaggaaggagaagaggaagatgggtctgggtctgggtctggg
tctgggtctgggtctgggagtggcagtgacaagggaacgccgaaaggtcgcaagaagatc
cggaagattctgaaggacgacaaattgcggtcggagacggtgaacgctctgaaggaggag
gaggaccggaggaagcgcatcgctgagagggaggctctgagggaaaaactcagagaggtg
aggagtgtgatcgtggttgaggcggcgtctcagatggactgtccaatcaccaccaagctg
gtgctggacgaggacgaggagacgaaagaaccgctggtgcaggtgcacaggaacctggtc
accaagctcaagccccatcaagtggacggcgttcagttcatctgggactgctgcgttgag
tctgtaaagaaggccaagaagacctccggcgggtcgggctgcatcctggcccactgcatg
gggctgggcaagacgcttcaggtggtgacgttcctccataccatgctgctgtgcgagaag
ctgaacttcagcacggcgctggtggtgtgtccgctcaacactgtcctcaactggaagaat
gagtttgagaagtggcaggacggcctcaaggacgaggagagcttagaggtgattgagctg
gccacagtgaagcgccctcaggagcgggcatacaccttgcagcgctggcatgaggatggc
ggcgtcctgattattggctacgagatgtaccgcaacctcacgataggccgcagtctcaag
agcaaaaagcttaaggagaccttccagaagaccctggtggacccaggccctgattttgtg
atctgtgatgagggccacatcctgaagaacgaggcgtcggccatctccaaagccatgaac
aacatcaagacccgccggagagtggtgctcacaggaacaccgctgcagaacaacctcatt
gagtaccactgcatggtgaacttcatcaaagagaacctgttgggttccgtcaaagagttc
cggaaccgtttcatcaaccccatgcagaatggccagtgtgcggactccaccgccgtggac
gtgcgactcatgaagaagagggcgcacatcctctatgagatgctggcaggatgtgttcag
agacgagattatacagcgttgaccaagttcctgcccccgaagcacgaatatgtattggcg
gtgcgcatgacgaccatccaggccaagctctaccgtcactacctggacaacttcacaagt
gtggggagtgcagggaatgcaatggaggggaaaggccgggccggaaccaaactcttccag
gacttccagatgctgagcagaatttggactcatccgtggtgtctgcagctggactacatc
aaaaaagaaaacaagggttactttgacgaggacagcatggaggagttcattgcctcggac
acggaggagtcttctatgagcctcacctctgaggacgatgcgcccaagaggaagaaggct
cgcgggaaggggaagaagaaacagagctcggagggttcggacagtgacgacttggaggtc
atcaaggagtggaacaccagctcccgcggcggcaacccggagagccgcaaccgggccgaa
ccggtggaggaggcaagggtcccctccactaccttttctccagactggcacaaggacttt
gtgaccgaggcggatgcagagatcttggcacattccggaaagatttcgcttctctttgag
atcctacgcatggcagaagagatggaggaaaaagttctggtgttcagtcagtccctcatc
tctctggacctgatagaagacttcctggagctctcctgtagagccaaagatgaggggaag
gagtctccatacaaaggagaggggaagtggttcccgaacattgactactatcgcctggat
ggatccaccggcgccatgacccgaaagaaatgggcagaggactttaacgataccagcaat
atcaggggtcgcctcttcctcatctcgaccagagcaggctctctgggcatcaacctggtg
gctgccaaccgggtcatcatcttcgacgcctcctggaacccgtcctatgacatccagagc
atcttccgcgtctaccgcttcgggcaaatcaggcccgtgttcgtctacaggtttttggct
cagggaaccatggaagagaagatctacgaccgccaggtggccaagcagtctctgtcatcc
cgtgtggtggaccagcagcagatcgaacgccacttcaccatgaacgagctgaccgagctc
tacacctttgagccggagctgctggatgaccccaccagcaagaaggggaaacgctccacg
ccagtgctgccgaaggacaccttcctggcggagttgctgcacagctttaaggatcacctg
gtgggctaccatgagcacgactccctgctggaccacaaggaggaggaggctctgagcgag
gaggaccgcaaggccgcctgggccgagtacgaggcagagaagaagggtctgtctatgcgc
accaaccagcaacaaatgatgggcaacagccagagcggctatttccacttcaacatggcc
gccctgtccaacatgaacaaccgtgagctggaggatctggtgaatcagggtcgacagaag
gtgatcgagacgagcaacgccatcaactcactgcagggagagccactagaagatgtgatc
agccgcatctggaaggacaaccctagtctggaggaagcgcaggtgcaggccatggctatg
tcccagcaggccaccattgagcgggagcgccagcgcatagaggtggcctacagggacgtg
ctccacaagcagcagaccttgatgatgtacgtgcagaaagtgctaaacaaccgcaaggtg
caggaacagcagctggccatggccaagcaggggctgctcatgaaccagatggctctgcag
aacggcatgatgggaccgggcaacctcaaccagatggagctgatgggcctctaccagcac
ctgcagcagatgcagcagggcatgggcggcaaccccgggccctccaagggtctgtag
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integrated database retrieval system
