Clupea harengus (Atlantic herring): 105903992
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Entry
105903992 CDS
T09045
Name
(RefSeq) protein strawberry notch homolog 2
KO
K26273
protein strawberry notch
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
char03036
]
105903992
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
105903992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ZirS_C
Motif
Other DBs
NCBI-GeneID:
105903992
NCBI-ProteinID:
XP_031416176
UniProt:
A0A6P8EVH6
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All DBs
Position
22:4975430..4993655
Genome browser
AA seq
1621 aa
AA seq
DB search
MTCELLFCPPHTATIGISHPDYVVETNTLSSVPPPDITYTLSISESVISTGLLSALQLEA
IIYACQQHEVILQNGQRAGFLIGDGAGVGKGRTVAGIILENYLKGRKRALWFSVSNDLKY
DAERDLKDIDAASIPVYALNKIKYGDTATSEGVLFATYSALIGESQAGGQHRTRLKQILD
WCKPNFDGVIVFDECHKAKNATSTKMGKAVLDLQSKLPKARVVYASATGASEPKNMIYMS
RLGIWGEGTPFKTFEDFLHAIEKRGVGAMEIVAMDMKVSGMYIARQLSFAGVSFRIEEIA
LDNEFKLMYNKAARLWAEALALFLRAADTLGLVSRKSLWGQFWSSHQRFFKYLCISAKVR
RLVELAKRELEQGKCIVIGLQSTGEARTREVLDENDGHLDRFVSAAEGVFHSLVQKHFPL
EKPKRDKPAGNKRKRKPRGRPPKYPKHSKDVVGEVISISDSSSCESDGMDSDSNSSPGSP
QDNDDVIFVNHINGHTAKLEELKQNLLSKISALGKDLPLNTLDELIDRFGGPEVVAEMTG
RKGRVVRRPDDSVRYESRAEQGLTIDHVNMREKERFMCREKLVAIISEAASSGISLQADK
RVQNQCRRVHMTLELPWSADRAIQQFGRTHRSNQVTAPEYIFLISELAGERRFASIVAKR
LESLGALTHGDRRATESRDLSKFNFENKYGNKALDKITKAILGHIKNTVPAPKEYPGGDV
AFFRNMKQCMIDVGILCSNPRFVINAEKDCTITKFLNRILGLEVHQQNFLFQYFTDNFEH
HIEKDKKEGKYDMGILDLAPGNDEIREETQERFLTAGNPQEGQVILYKISVDRGMPWEEA
FNKATTLTGEDEGFYLSHKLRGSMPCVLLAEQGRGRNLIVFKPNIGKQTHPESLDNLQLR
YRKVPPEEAKDCWDSQFEFSLQKCSHAHWKGKCKQKELGNECWLGMRLRQYHMLCGALLR
VWKRVADIVSDITNSSILQIVRLKTKTNSKQVGIKIPENCVARVRTELVQMDEEVKRQRQ
EREQRVHEKQATEQLLLRLAKLRSVNPNLNLQSLASLYPRPNAASATNSPRILPALVKKE
VLDDEVLDLTLSPSPSPDSSTAEAGAESSPTLPETFHLEALISQERQREQGGGVPHTHAL
HTRLLQQQQQQQQQQQQQQQQQQQQQPRSPVPPRALSQQRSLTQAQAHQQAQAQQQTNRL
LLAHTNLRQQLQQRPRSPLVSHTHAQANTVPHGSYTQSAQRGHPLRQQRQTNVRKLQQQS
TQHTALALNARKQQLRTDAHPVMQQFQQQQQRRELPYAQQATNRQRLPNALHIPNTRALH
IGNAHTQQLSNTQATSTRMIQQQQQQQQHQQQSQQHQQQSQQHQQQSQQQMLHNSLGQHG
SHTQPHTLTQTQAHPQVKHTHALSVSPPISLDDCPSPDDILDFLDCSASSAVLPPSYFSS
ASSQAVSSPPSLSSSSPSIGSSASLYSAGLPLSIGAGAGSSSVFACSSPSSPANISILPS
NHTLLSSSNHSSVFSSNNNSSSILPPAHTLLPSSANSSHLSSSDHSLNPSLLCTAHSLQP
PLDTYLLSSNNPSLFSSSSSSSSSSSSLPNGHCSMDALDMLRASASDRQSVIQYKPEWDA
T
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atgacttgtgagctcctcttctgtcctccacacacagctacgattggcatctcccacccg
gactatgtcgtggagaccaacaccctgtccagcgtgcccccacccgacatcacctacacc
ctctccatctctgagagcgtcatcagcacaggccttctctccgcactgcagctggaggcc
atcatctatgcctgccagcaacacgaggtgatcctacagaatggacagcgagcaggcttc
ctgattggagacggggcaggagtgggaaaggggcgaacagtggccggcatcatcttggag
aactacctgaagggccgcaagagagccctctggttcagtgtttccaatgacctgaagtac
gacgcggagagagatctcaaagacattgatgcggccagtatccctgtttacgctttaaac
aagataaagtatggagacaccgctacctcagagggggtgctgttcgccacgtactccgct
ctgattggtgagagtcaggcaggcgggcagcaccgcaccagactcaagcagatcctggac
tggtgcaaacccaacttcgatggagtcattgtgtttgatgaatgccacaaagccaaaaat
gccacgtccactaagatgggcaaggccgtactggacctgcagagcaagctgcccaaggcg
agggtggtgtacgccagtgccacaggtgcctcggagccaaagaacatgatctacatgagc
cgcctggggatctggggagagggcacacccttcaagacctttgaagactttctgcatgcc
attgagaaaaggggtgtgggagccatggagatagttgccatggacatgaaggtcagcggg
atgtacatcgcccggcagctgagcttcgcgggtgtgtcgttccgcatcgaggagatcgcc
ctggacaacgagttcaagctgatgtacaacaaagcagcccgactgtgggctgaggccttg
gccttgttcctgagggccgccgacacactgggtctggtgtccaggaagtcactgtggggc
cagttttggtcctcgcaccagcgcttcttcaaatacctctgcatctcagccaaagtgcgc
cggctggtggagctggccaagagggagttggaacagggcaagtgcattgtgattggtctg
cagtccacgggtgaggctcggaccagagaggtgttggacgagaatgatgggcatttggac
cgctttgtctccgccgctgagggtgtgttccactcgctggtgcagaagcacttccccttg
gagaagcccaagagagacaagcctgccgggaacaagaggaaacggaagccacgtgggagg
cctcctaagtatccaaagcacagtaaagacgtggtaggggaggtgatcagcataagtgac
agcagcagctgtgagtcggatggaatggacagcgactccaactcttcccccgggtcccca
caggacaacgatgatgtcatctttgttaaccacatcaacggtcacacagccaaactagaa
gaactgaaacagaatctgctgagcaagatctctgcgcttggaaaggacctgcccctcaac
accttggatgagctgattgaccgcttcggaggacctgaggtggtggctgagatgactggg
cgtaagggtcgggtggttcgtcggcctgatgacagtgtgcgctacgaatcacgcgcagag
caaggcctcaccatcgatcacgtcaatatgagagagaaggagcgcttcatgtgtagagaa
aagctggtagcgatcatctccgaggcagccagctcaggcatttccctgcaggctgacaag
cgcgtgcagaaccagtgcaggagggtccacatgaccctggagcttccttggagtgccgac
cgggccatccagcagttcggccgcactcaccgctccaaccaggtgaccgctccggagtac
attttcctcatctcagagctggcaggagaaagacgctttgcttcaatcgtagcgaagagg
ctggagagcttgggtgctttgactcatggagacagacgtgccacagagtcgagagacctg
agcaagttcaactttgagaacaagtatggaaacaaagctctggataagatcaccaaagcc
attctgggccacatcaagaacactgtcccagcacccaaggaataccctggtggtgatgta
gctttcttcagaaacatgaagcagtgcatgattgacgtgggaatcctctgcagtaatcct
cgttttgtcatcaatgctgagaaagactgcaccatcaccaagttcttgaaccgcatcctg
ggcctggaggtccaccagcagaacttcctgttccaatacttcactgacaactttgagcac
cacattgagaaggacaagaaagaaggcaaatatgacatgggcatcctagatctggctcca
gggaatgatgagatccgtgaagagacccaggagcgcttcttgaccgcagggaacccacag
gagggacaggtcatactgtacaagatcagtgtagatcgaggtatgccatgggaggaggca
ttcaataaggccactaccctcactggagaagatgagggcttctacctctctcacaagctg
cgaggaagcatgccatgtgtactgctagcagagcagggtcgagggagaaacctcatcgta
ttcaaacccaacatcggcaagcagacgcaccccgagagcttggacaacctgcagctccga
taccgcaaggtgcctccagaggaggcaaaagattgctgggatagtcagtttgagttctcc
ctgcagaagtgcagccatgcccattggaagggcaagtgtaaacagaaggagttgggcaat
gaatgctggctgggtatgcgtctgaggcagtaccacatgctgtgtggtgccctactgcgt
gtatggaaacgtgtggcagacatagtctctgacatcaccaactccagcatcctgcagatt
gtccgattgaaaaccaaaacgaacagcaagcaagtgggcatcaagatccctgagaactgt
gtggcccgcgtgcgtacggagctggtccagatggacgaggaggtgaagcggcagcggcag
gagcgcgagcagcgggtgcatgagaagcaggccaccgagcagctgctcctccgcctggcc
aagctccgctccgtcaaccccaacctaaatcttcagagccttgccagcttgtacccccgt
cccaatgccgcctccgccaccaactcccccagaatcctgcccgccctggtgaagaaggag
gtgctggatgacgaggtgctggacttgacgctgagcccttctccctccccggacagcagc
acggcggaggcgggggctgagagcagccccaccctgcctgagaccttccacctggaggca
ctcatctctcaggagcggcagcgcgagcagggcggcggcgtcccccatacgcatgcgttg
cacacacgcctactgcagcagcagcagcagcagcagcagcagcagcagcagcagcagcag
caacaacaacagcagcagccccgcagtcctgtccccccacgcgccctttcccagcagagg
agcctgacgcaggcacaagcccatcagcaggcacaagcccagcagcagaccaaccgccta
ctcctcgcccacaccaacctacgccagcagctgcagcaacgcccaaggagcccgctggtc
tcacacacgcacgcgcaggccaacaccgtgccacacggctcctacactcagtccgcacag
cgaggtcacccgctgcggcagcaaaggcagacgaacgtgcgcaagctgcaacagcagtca
acacagcacacggctctggcactaaatgcgcgcaaacagcagctccgcacagacgcgcac
cctgtaatgcagcagttccagcagcagcagcagcggcgagagctgccgtatgctcagcag
gccacaaacaggcagcgcctcccaaatgctctgcacatcccaaacacacgcgcactacac
ataggcaacgcgcacacgcagcaactgtcaaacacacaggcaacaagtactcgcatgatc
cagcagcagcagcagcagcagcagcatcaacaacaatcgcagcagcaccaacaacaatcg
cagcagcatcaacaacaatcgcagcagcagatgcttcacaacagcctgggtcagcatggc
tcacacacccagccccacacgctcactcagactcaggcgcacccccaggtcaaacacaca
cacgcgctgtcggtgagcccacccatctcgctggatgactgtccatctcctgatgacatt
ctggacttcctggactgctcagcgtcctccgctgttctgccgccatcgtacttttcctct
gcctcctcgcaggcggtctcttcccctccctctctgtcgtcctcgtctccctccatcggc
tcctccgcgtcgctctactccgccggcctgcctctgtctatcggcgctggcgcaggatcc
tcttccgtctttgcttgctcctccccttcctctcctgctaatatctccatcctcccctct
aatcacacgcttctgtcctccagtaaccacagctctgttttctcctctaacaacaacagc
tcctccatcctccctccagcacacactctcctcccctcctctgccaactcatcccacctc
tcctcctcagatcactcgcttaacccgtctctgctctgcactgctcactccctccaaccc
cccctcgacacctacctcctctcctcaaacaatccctcactcttctcctcctcgtcctca
tcctcctcgtcctcgtcctcattgcccaatggccactgcagtatggacgctttggacatg
ttgagagccagtgcgagtgaccgtcagtctgtcatccagtacaagccagagtgggacgcc
acttag
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