Clupea harengus (Atlantic herring): 105904029
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Entry
105904029 CDS
T09045
Symbol
rnf38
Name
(RefSeq) E3 ubiquitin-protein ligase RNF38
KO
K19041
E3 ubiquitin-protein ligase RNF38/44 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105904029 (rnf38)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105904029 (rnf38)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105904029 (rnf38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
zf-ANAPC11
VPS18_RING_C
zf-RING-like
zf-RING_16
FANCL_C
Motif
Other DBs
NCBI-GeneID:
105904029
NCBI-ProteinID:
XP_012687304
UniProt:
A0A6P3W1Z5
LinkDB
All DBs
Position
22:complement(2243500..2269089)
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AA seq
694 aa
AA seq
DB search
MPIATTGQPTTQEPRVCSQLPATPEPIPKRSNLCDDTGGHSQDHSHRGPEVARGARNHSH
TAARLSLALGSSSPSQSPPTSSHIASSLHHQPPPMATEPPRTRSRSRSGFYQCGVNGGAN
GNNNSSGSNINNGSSIHNTGGAIGVSHTQQHNSGCIPFGAHGHTENLRPHGAILSPGAHR
HHSGPSAHRNLGAGAIGGAYHYHPDHAFAEGADKVEDSPSPKRQRLSQQSVLELTAAPPQ
TPSPPMRPWELPPSRRAHPYPHPHTHYQPERCHTPARHRRSPPVRRQRSRRERLSRHHLP
HHGSPGGGQDENYRHPAHAPLPHQSYPYSQHPPPPGLEEPRAFHPPTLSPRLLHHQQQGA
MVMDLHEQLPQGTVPVSYTMSPMPPHALPPPLCSGQHIPACSSQQQVPACSVVFSGQHYP
VCSVPPPMLQACSVQHLPVPYAFPSLLSSDTPFLLHPPHLSHHPAHLPPPGQFMPFQTQQ
SRSPLQRIENEVELLGEHLSVGGGFNYPPSGHPSPLPPQTPLQFLSHDPLPQELFGVPYP
PFMPRRITGRRYRSQQAAAPPPIHPSFLPYFLSMFPVQPTVGPAISLELDVDDGEVENYE
ALLNLAERLGEAKPRGLLKADIEQLPSYRFNPTNHQSEQTLCVVCMCDFESRQLLRVLPC
NHEFHAKCVDKWLKSNRTCPICRADASEVQRDSE
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgccaatcgccaccactggtcaaccgactactcaagagccccgcgtttgttctcagctc
cccgcaacccctgagcccattccgaaacggtcaaatttatgtgacgacacggggggacat
tcacaagaccactcacacaggggaccggaggtggctagaggcgctcggaaccatagccat
accgccgctaggctctctctagctctcggatcctcctctccgtcgcaatcccctcccacg
tcttcccacatcgccagttcactccaccaccaaccccctcccatggcaacggaaccacct
aggactcgatcgcgttcgcggtccggattttaccaatgtggagtgaatggaggagctaat
ggtaacaacaacagcagcggcagcaacatcaacaacggtagtagcattcataatactggt
ggagccatcggagtgagccacacacagcagcacaactccggatgtataccgttcggcgct
cacggtcacacggaaaacctacgcccccatggagcgatcctgtctcccggtgcacacaga
caccactccggccccagcgctcacagaaacctaggcgcaggagccattgggggagcctac
cactaccacccagaccatgcctttgctgaaggggctgacaaggtggaggacagcccgagc
cccaagcgccagcgtctctcccagcagtccgtgctggagttgaccgccgcccctccccag
accccctctccccccatgaggccgtgggagctcccgcccagccgcagggcgcacccctac
cctcaccctcacacacactaccagcctgagcgctgccacacgcccgcacgccaccggcgc
agcccacctgtgcgtcgtcagcgcagccgtcgcgagcggttgtcacggcaccacctgccg
caccacggttctcctggaggcggtcaggatgagaactaccggcacccggcgcacgcaccc
ctcccccaccagagctacccctacagccagcacccccctcccccgggcctggaggagcca
cgagccttccacccccccacgctctcgccacgcctgctgcaccaccagcagcagggagcc
atggtcatggacctgcacgaacagctcccccagggcacagtgccggtttcgtacacgatg
tctccgatgcccccccacgcgctgccccctcccctctgcagtgggcagcatattccagcc
tgctcctctcagcagcaggtgcccgcctgctccgtcgtcttcagtggacaacactaccct
gtctgcagtgtacctcctccgatgttgcaggcgtgttcggttcagcatctgccggttcca
tatgccttcccctccctcctgtccagtgacacccctttcctgctgcaccccccacacctc
tcgcatcatcccgctcacctccccccgccaggacagtttatgcccttccagacacagcag
tctcgctcgcccctacagaggatcgagaatgaggtggagttgctgggggaacacctgtct
gtaggtggggggtttaactaccccccttcaggccaccccagccccctgcccccacagaca
cccctccagttcctctcccacgacccactaccacaggagctctttggagtgccctaccct
cccttcatgcctcgtcgaatcacaggccgccgctaccggtcccaacaggcagcagcccct
cctccgatacaccccagcttcctgccttacttcctttccatgttcccagttcagcccact
gtaggtccagccatcagtctggaacttgatgtggatgacggcgaggtggagaactatgag
gccctgttgaatctggcggagcgtctgggcgaggccaagccaaggggcctgttgaaagca
gacatagaacagctgccgtcctacagattcaaccccaccaaccaccagtcagagcagaca
ctgtgtgtggtgtgtatgtgcgactttgagtcccgtcagctgttaagagttcttccctgc
aaccatgaattccacgccaagtgtgtcgacaaatggctcaagagtaatagaacttgtcct
atatgccgggcggacgcctctgaagtgcagcgcgactccgagtga
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