KEGG   Clupea harengus (Atlantic herring): 105904108
Entry
105904108         CDS       T09045                                 
Symbol
kdm5a
Name
(RefSeq) lysine-specific demethylase 5A isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
char  Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:char00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:char01009]
    105904108 (kdm5a)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:char03036]
    105904108 (kdm5a)
Enzymes [BR:char01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     105904108 (kdm5a)
Protein phosphatases and associated proteins [BR:char01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     105904108 (kdm5a)
Chromosome and associated proteins [BR:char03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    105904108 (kdm5a)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID PHD zf-C5HC2 JmjN PHD_5
Other DBs
NCBI-GeneID: 105904108
NCBI-ProteinID: XP_031438859
Ensembl: ENSCHAG00000003306
UniProt: A0A6P8GI71
LinkDB
Position
16:1524082..1543732
AA seq 1720 aa
MSMYAEFVPPPECPVFEPSWEDFSDPLGFINKIRPIAEKTGICKIRPPVDWQPPFACDVR
NFRFTPRVQRLNELEALTRVKLNFLDQIAKFWELQGCRLRFPHVEKKILDLYLLSKIVSA
EGGFDTVCKEKRWSKVASRMGFPSGKGTGSLLRSHFEKILYPYELFQSGASLTGIQRLYE
EGEDTEDQDEGIEGGVDEEDEEEEEQEKECRDRDGLCDRTQNKDQPASERRSRRLKSERE
NKEPKSLQIFGTSPKMGGLEIVLADDAFLKKQRHLKAQAFAIKMRPRKETLEVNFIDLYL
CLVCGRGDEEDRLLLCDGCDDSYHTFCLIPPLQDVPKGDWRCPKCVAEECSKPREAFGFE
QAVRGYTLQSFGEMADHFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVIVEYGADISS
KDVGSGFPVRDGKRRLLGDEEEYANSGWNLNNMPVLEQSVLTHINVDISGMKVPWLYVGM
CFSSFCWHIEDHWSYSINFLHWGEPKTWYGVPAHAAEQLEAVMKKLAPELFDSQPDLLHQ
LVTIMNPNILMEHGVPVYRTNQCAGEFVVTFPRAYHSGFNQGYNFAEAVNFCTADWLPMG
RQCVAHYRRLHRYCVFSHEELLCKMAADPDSLDVELAAAVVKELGEVMEEETRLRQAVRD
MGVLSSEQEVFELVPDDERQCHQCKTTCFLSALTCSCSPERLVCLHHTANLCDCPLGNKC
LRYRYDLEEFPSMLYGVKSRAQSYDTWAKRVSEALAADHKSKKDLIELKVMLEDAEDRKY
PENNLFRQLRELVKEAETCSSVAQLLLSHKQKLRQRPEVSRARSKLTVEELKAFVEQLFR
LPCVISQARQVQELLENVEEFHERAQEALADETPDSSKLQALLDLGAGLDVELPELPRLK
QELQQARWLDEVRLTLAEPQRVTLELMKRLIDSGVGLAPHHAVEKAMAELQEILTVSERW
EDKARACLQARPRHSMTTLDSIVIEAKNIPAYLPNVLALRDALQKAKEWTCKVEAIQNGS
NYAYLEQLESLLGRGRSIPVRLDPLPQVESQVGSARGWRERTGRTFLKKNSTYTLLQVLS
PRVDIGVYGNSKSKRKRAKELLEKERGLELEGLSDLDESLEEIRDPATVVAAFKAKEQKE
VESMHSLRAANLAKMAMADRIEEVKFCLCRRTASGFMLQCELCKDWFHGACVPLPKTTTQ
KKMGTGWQSSSKESKFLCPLCQRSRRPRLETILSLLVSLQKLPVRLPEGEALQCLTERAM
SWQDRARQALATDELSSALAKLSVLSQRMVEQAAREKTEKIINAELQKAAANPDLQVRHY
RVGLFEGHIQTFQQAGFSRATSPRPSLDYDDEETDSDEDIRETYGYDIKDPGEVKPYLFC
DEEIPVKSEEVVSHMWPATPSFCAEHAYSSASKSCAQSQAAPRKQPRKTPLVPRSLEPPV
LELSPAAKAQLEELMMVGDLLEVSLDETQHIWRILQATHPPSEERFLQVMEPEDGMMDKP
VKLKVKVSEKKRKRKLERAEQHLLLSAGGGEGGRAKAKELKRSVDGLGKPKKKKLKLNVD
KARELKMLAKRLAKEEKERKRKEKAVAKAEAVKEGLEKKREKKILDIPSKYDWSGAEDSN
DENAVCAAKNCIRPCKDKVKVDWVQCDGGCDEWFHQVCVGVTCEMAENEDYICCLCQRKA
AGPSGAGAVMKVAMETVVISTPLCVVSSPALSQPDPEESS
NT seq 5163 nt   +upstreamnt  +downstreamnt
atgtccatgtacgccgaatttgtacctccaccggaatgcccagtttttgagccgagttgg
gaagatttttcagatcctttaggattcattaataagattcgccccatcgctgagaagact
gggatttgcaaaattcgacctccagtggattggcagcctccttttgcctgcgatgtgaga
aatttccgctttacgcctcgtgtccagaggctaaatgaacttgaggcactcaccagggtc
aaactgaatttcttggatcaaattgcaaagttttgggagctacagggttgcaggctgcgg
ttccctcatgtggagaagaagatcctggacttgtacttgcttagcaagatagtctcagca
gaaggtggttttgacacggtgtgtaaggagaagcgttggtctaaggtggccagtcgaatg
gggtttccctcagggaagggcacgggctccctgctccgctcccactttgagaagatcctc
tatccctatgagctcttccagtctggagcctcactcactggtattcagagactgtatgag
gagggagaggatacggaggaccaggatgaaggcatcgagggtggagtggatgaggaggat
gaagaggaggaggaacaggagaaggagtgtagggatcgagacggcctgtgtgaccggaca
cagaacaaggaccagcctgcgtcagagagacgctcccggcggctcaaatcagagcgagaa
aacaaggagcccaaaagcctgcagatctttggcaccagtcccaagatgggggggttagag
attgttttggctgatgacgctttcctcaagaagcagcggcatctcaaggcccaggccttt
gccattaaaatgcgtccacgcaaggaaacgctggaggtgaactttattgatctgtacttg
tgtctggtgtgtgggcgtggtgatgaggaggaccgcctgctcctgtgtgatggctgtgac
gacagctaccacaccttttgtctgatcccgcccctgcaggacgtgccaaagggagactgg
cgctgcccaaagtgtgtggcagaggaatgcagcaaaccaagggaggcctttggctttgag
caggccgtacgggggtacaccttgcagagctttggagaaatggcagaccacttcaagtcc
gactacttcaatatgcctgtgcatatggttcctacagagctggtggagaaggagttctgg
aggcttgtgagcagcatagaggaagatgtcattgtggagtacggagctgatattagctcc
aaggatgtgggcagtggattccctgtcagggatggaaagaggagactgctaggagatgag
gaggagtatgccaactcgggctggaaccttaacaacatgccagtgttggagcagtctgtt
ctcacgcacattaacgtggacatctctggtatgaaggtgccctggctgtatgtgggcatg
tgtttctcctctttctgttggcacatagaggaccactggagctactccatcaactttctg
cactggggtgaacccaagacgtggtacggtgttcccgctcatgcggccgagcagcttgaa
gcagtgatgaagaagttggccccagagctgttcgactcccagccggacctgctgcaccag
ctcgtcaccatcatgaaccccaacattctcatggaacacggtgttcctgtgtaccggacg
aatcagtgtgccggggaatttgtggtgacgttcccaagggcgtatcatagcggcttcaat
cagggctacaactttgctgaggccgtcaacttctgcacagcagactggttgcctatggga
cgtcagtgtgtggcccactaccgccgccttcaccggtactgcgtcttctctcacgaggag
ctcctctgcaagatggctgctgacccggacagtctggatgtggagctggcagcggccgtg
gtgaaggagctgggggaggtgatggaggaggagaccaggctcagacaggctgtgagggac
atgggggtgctgtcctctgagcaggaggtgtttgagttggtcccagacgatgagaggcag
tgccatcagtgcaagaccacctgcttcctgtctgcgctgacgtgctcctgcagccccgag
cggctggtctgcctccaccacaccgctaacctctgtgattgtccacttggcaataaatgt
ctccgatacaggtatgatctggaggagttcccctccatgctgtacggggtgaagtctagg
gcgcagtcctatgacacgtgggctaagagggtatcggaggcgctggctgcagatcacaag
agtaagaaagacctgattgagctgaaggtgatgctggaggatgcagaggacaggaagtac
cctgagaataacctcttccgccaactgcgcgagctggtgaaggaggccgagacgtgctcc
tcagtggcacaactactcctcagccacaagcagaagctcaggcagcgcccggaggtgagt
cgcgcgcgcagcaagctgacggtggaggagctgaaggcgtttgtggagcagctgttccgc
ctgccctgcgtgatcagtcaagctcgccaggtccaggaactattggagaacgtggaggag
ttccatgagcgggctcaggaggcgctggcagacgagactccagactcctctaagctgcag
gcgctgctggacctgggcgcgggcctggacgtggagttgccggagcttccgcggctcaag
caggagctgcagcaggcgcgctggctggacgaggtgcgcctcaccctggccgaaccgcag
cgcgtcaccctggagctcatgaagaggctgatcgactcgggagtggggctggcgccacac
cacgccgtggagaaggccatggccgagctgcaggagatcctcacggtgtcggagcgatgg
gaggacaaagcccgcgcctgcctacaggccagaccccgccacagcatgaccaccctggac
agcattgtcatcgaggccaagaacattcctgcataccttcccaatgtgttggcactgagg
gatgctctacagaaagccaaagagtggacttgcaaagtcgaagccatacagaatggcagt
aactacgcttacctggagcagctggagagcctgctggggaggggccgctccatccctgtg
cgcctggatcccctgccccaggtggagtctcaggtggggtcggccagagggtggagggag
aggacaggccgcaccttcctcaagaagaactccacctacaccttactgcaggtcctcagc
cctcgtgtggacataggtgtttacgggaacagcaagagtaagcgcaagagggcgaaggag
ctcctggagaaggagcggggcctggagctggagggcctgagtgacctggacgagagtctg
gaggagatcagagaccctgctaccgtggtggcggcgttcaaggccaaagagcagaaggag
gtggagtccatgcactcgctccgtgccgccaacctggccaagatggccatggccgaccgc
atcgaggaggtgaagttctgcctgtgccgccggacggccagcggcttcatgctgcagtgc
gagctgtgcaaggactggttccacggggcctgcgtgcctctgcccaagaccaccacgcag
aagaagatgggcacgggctggcagagcagcagcaaggagtccaagttcctgtgcccgctg
tgccagcgctcgcgccgcccgcgcctggagaccatcctctcgctgctggtgtcgctacag
aagctgccagtgcggctcccggagggcgaggccctgcagtgcctgacggagagggccatg
agctggcaggaccgggcgcggcaggcgctggccaccgatgagctctcgtctgctctggcc
aagctctccgtcctcagccagcgcatggtggagcaggcggcccgggagaagacggagaag
atcatcaatgctgagctccagaaggccgcagccaaccctgacctgcaggtgaggcactac
agggtgggcctttttgagggtcacatccaaacattccagcaggcaggcttcagcagggcc
acctcacctagaccgtctttggactatgatgacgaggagacggattcagatgaagatatc
cgggaaacgtatggctacgacatcaaggacccgggggaggtgaagccctacctcttctgt
gatgaggagatccctgtgaagtctgaagaggtggtcagtcacatgtggccggccacgccc
tccttctgtgctgagcatgcctactcctcagcctccaagtcatgtgcccagagtcaagcc
gcccctcgcaagcagcccaggaagaccccgctggtgccacgcagcctggagcccccggtg
ctggagctgtcccccgcagccaaggcccagctggaggagctgatgatggtgggggatctg
ctggaggtgtccctggacgagacccagcacatctggcgcatcctgcaggccacgcaccca
ccctcggaggagcgcttcctgcaggtcatggagccagaagacggcatgatggacaaacca
gtgaagctgaaggtgaaggtctcggagaagaagcgcaagaggaagctcgagcgggctgag
caacacctcctcttgtctgcagggggaggcgaggggggccgagccaaggccaaggagctc
aagagaagcgtcgatggcctgggcaagcccaagaagaagaagctcaagctcaacgtggac
aaagcccgtgagctcaagatgctggctaagcgcctggccaaagaggagaaggagaggaag
aggaaggagaaggctgttgccaaggccgaagctgtcaaggaaggtctggagaagaagaga
gagaagaagatcctggacatcccctcgaaatatgattggtcaggagcagaggactctaat
gatgagaacgccgtgtgtgcggccaagaactgcatacggccctgtaaagataaggtgaag
gtggactgggtgcagtgtgatggcggctgtgacgagtggttccaccaggtgtgtgtgggc
gtgacctgtgagatggcggagaacgaggactacatctgctgtctgtgccagcggaaagcc
gccggcccgagcggagccggagcggtgatgaaggtcgccatggagaccgtggtgatctcg
acgcccctctgcgtcgtctcgagcccggccttgtcccagcccgaccccgaggagagcagc
tag

DBGET integrated database retrieval system