Clupea harengus (Atlantic herring): 105904213
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Entry
105904213 CDS
T09045
Symbol
rlim
Name
(RefSeq) E3 ubiquitin-protein ligase RNF12-A isoform X1
KO
K16271
E3 ubiquitin-protein ligase RLIM [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105904213 (rlim)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105904213 (rlim)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105904213 (rlim)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
Prok-RING_4
zf-RING_UBOX
zf-RING-like
zf-RING_16
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
105904213
NCBI-ProteinID:
XP_031442976
Ensembl:
ENSCHAG00000023856
UniProt:
A0A6P8H5L1
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All DBs
Position
20:complement(8698813..8708151)
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AA seq
782 aa
AA seq
DB search
MEGSDNAEQGGSDQSDSQRRRQLARLDREEAFYQFVNNLSEEDYRLMRDNNLLGNPGEIT
EEELLTRLQQVKDGGPRPDTGASTSPSPNANANANTSGSGGSSEARRPEATADPENPEDP
SNSDTLLDWLNTVRRTGNTTRSGHRGNQSWRAVSRTNPSSGDFRFSLEININRNLAEQQT
QTEAAEQAAGGAPPEGTSAAATEAQPDAPPVTQPVAPTVAPTVAPPLVPTVAPPEAQPDA
PPIAQPVAPTVAPTVAPPVAPPEAQPDAPSVSQPDAPPLAPPEAQPNAPPEPMEVEEEPV
VEELAVIVEPELSPPVTRPASPQPLQVTVPIPLTIPTPPLQAAAVAAVMVAEPPQTRRGV
VRPRSRSPEQRRTRACTARSRSPLSLDRMDGLPPAPTIPEPPLPPPPPPHMEGSSRTRQH
IPSRHVTVETTDHQASPASTHAPDAPPAPAQEEELPGGEAGAGRRPPTIMLDLQVRRVRP
GEYRQRDSIANRTRSRSQPASNSGSGSSSGTGSGSGTGAGGAPGNNTFLYETEQGGFRRT
FSRSERAGVRTYVSTIRIPIRRISDAGLGEATSVALQSMIRHIMTGFGELSYFMDSDSDS
SDSPRASGPTAPADGDAPSATSAASAVAAAAAASQAHVAGSVGAPQADERDREGDETDSP
AAGAATEGRGRARAPISLEETGSLPFLRLAHFFLLNDEDEEQPRGLTKEQIDNLSTRNFG
ESDALKTCSVCITEYAQGHKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLATTNRES
VV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggagggttcggacaatgcagaacaaggtggcagtgatcagtctgattcccaacggaga
cgtcagctggcccgactcgacagggaggaggccttctatcagtttgtcaacaacctcagc
gaagaggactaccgattaatgagagacaataaccttctgggcaaccccggtgagatcacg
gaggaggagctgctgactcgcctgcagcaggtgaaggatggcgggccgcgcccagacaca
ggcgccagcaccagtcctagccccaatgccaacgccaatgccaacacaagcggcagtggt
gggagcagtgaagcacgcagaccagaggcaactgcagaccctgagaacccggaggacccc
tctaacagcgacaccctcctggactggctcaacaccgtgcgtcgcaccggcaacacaacc
cgcagtggtcaccgcggcaaccagtcctggcgggcggtgagccgcaccaacccgagcagc
ggggacttccgcttcagcctggagatcaacatcaaccgcaacctagcggagcagcagacg
cagacggaggcagcggagcaggctgcaggaggcgcgccaccagaggggaccagtgccgct
gcaacagaggctcagcctgatgcccctcctgttacccagcctgttgcccctactgttgcc
cctactgttgccccgcctcttgtccctactgttgcccctcctgaggctcagcctgatgcc
cctcctattgcccagcctgttgcccccactgttgcccccactgttgcccctcctgttgcc
cctcctgaggctcagcctgatgccccttctgtttcccagcctgatgcccctccacttgcc
cctcctgaggctcagcctaatgcccctcctgaacccatggaggtcgaggaggagcctgtg
gtcgaggagctagcagtcatcgtcgagccggaactttcgccccctgtgactcggcctgct
agcccccagcccctccaggtgacagtgccaatccccctcaccatccccactccgcccttg
caggcagcagcagtggcggcggtgatggtggcagagcccccccagacccgtcggggtgtg
gtgcgcccccgcagccgtagccccgagcaacgccgcacccgcgcttgcacagcccgcagc
cgctccccgctcagcctggaccgcatggacggcctgccccctgccccgaccatcccagag
ccccctctgcctcctcctcctccaccccacatggagggcagctcacgcacccgccagcac
atcccctcccgccatgtcacagtggagacgacagaccaccaggcttccccagcctctacc
catgcccccgatgcccctccagctcctgcccaggaggaggagctgcctggtggggaggca
ggcgccggccgcaggccccccactatcatgctagacctgcaggtgcgtcgggtccggcct
ggcgagtaccgccagagggacagtattgctaaccgcacccgctcgcggtcccagcccgct
agcaacagtggcagcggcagcagcagtggaacaggaagtggaagcgggacgggtgctggc
ggcgctcccggcaacaacaccttcctgtatgagacggagcagggcggcttcagacgaaca
ttctcccggtcggagcgggccggcgtgcgcacctacgtcagcaccatccgtatccccatc
cgacgcatctccgacgcgggactcggggaggccacctccgtggccctgcagtcgatgatc
cggcacatcatgacaggctttggcgagctgagctacttcatggactccgactcggactcg
tccgactcaccccgggccagcgggcccactgcgcccgctgatggcgatgccccatctgcc
actagtgctgcttcagctgtcgctgccgccgctgctgcctctcaggctcacgtagcgggc
tcagtcggtgccccgcaggctgacgagagggacagggagggggacgaaacggattccccg
gcggcgggcgccgccacggagggccgcgggcgtgccagggcccccatcagcctggaggag
acgggttcgctgcccttcctgcgactggcccatttcttcctgctcaacgacgaggatgag
gagcagccgcgcggcctcaccaaggagcagatcgacaacctgtccacgcgcaacttcggc
gagagcgacgcgctcaagacgtgcagcgtttgcatcaccgagtacgcgcagggccacaag
ctgcgcaagctgccgtgctcgcacgagtatcacgtgcactgcatcgaccgctggctctcg
gagaactccacctgccccatctgccggcgtgcagtgcttgccaccaccaaccgcgagagt
gtggtttga
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