Clupea harengus (Atlantic herring): 105904425
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Entry
105904425 CDS
T09045
Symbol
frem1b
Name
(RefSeq) LOW QUALITY PROTEIN: FRAS1-related extracellular matrix protein 1b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105904425 (frem1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
char04091
]
105904425 (frem1b)
Lectins [BR:
char04091
]
C-Type lectins
Lecticans
105904425 (frem1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Calx-beta
Lectin_C
Motif
Other DBs
NCBI-GeneID:
105904425
NCBI-ProteinID:
XP_031430802
Ensembl:
ENSCHAG00000010129
UniProt:
A0A6P8G599
LinkDB
All DBs
Position
10:1493479..1525787
Genome browser
AA seq
2141 aa
AA seq
DB search
MEVVTLQQSLFLLVVILDSACAESLVRLNLGLDVTRGQSVFVTEKELQLGATGATDSCKV
EVLLNEPVTQRVGKLTPQVFDCQFLPDEVMYAHNGSPLLEEDAVMLRVYRFTDMDTNIET
FLLRVRIVEHSSKLVEFGSVPLVVQEFYGLSNALDSRVLTFPTRPEVVCTVRLLTSETNA
PTLGQLVTEDPVQAAQEKVLNAAPRKGRQASISCPGNRPCLHSNREVRFLKVTCSEFLTS
GLKYQHLSPPSPEIDYIPIRVELRDKTSRALLEAESVWLPVLIHGAMPNHPPHAAFMSMF
ILEVDQFILTPMTTAALDAKDHETPQARLVFNVTKPPSEGYITHLDDHTKPVGSFSWQDL
NDMKIAYQPPNSSVTNRRNYEVEFVAIDDSFDTSSPIMVDFSIRTAETNAPRVSWNMGLD
LLEGQSRPITWENLQIVDNDNINAVTLVAVXGPLHGKLSVRGGKGFMFKVKDLREGVVVY
QHSDTDTTRDYIIFRITDDRHSTRHKFPINILPKDDTPPFLINNVAFEVQEGGWVRVEEY
MLMASDLDSSDDYILYQLLTQPHAGEMVKKTSAYDAGVPVSSFLQRDLFQGLIYYRHSGE
EVFEDSFDFILSDSHQPPNLSDRQTVVVQVFPVKDQLPVEVSGAVRSITLRETEVVYLTQ
SHLHFRAPEHSDADLAYVITQPCFSTIKPGMPDAGRLFFTDSSHSMKKDYMMPVLKSFTQ
NAVNHHKVGYMPPIEDIGLEPLYVQFVFSVSDQHGGTLTGLVFNITVIPVDNQKPEMFTN
LLRVEEGGGVFLTEEHLLIRDVDTLPEDLRVRLDAPPRHGRLELQGVPLQETHSFSLLDI
RALRVRYIHDDSETVKDTAVLTVTDGTSSTQAELLVQVMPVNDEPPQLGPGLRAGLSCAE
GGRVQITVEYLFATDADSDDARLTYMLARAPTHGELHRGGGPVDKFSQQDLLQGTVYYIH
TGGEVGPYSVSDSVTLIVSDGEAGGQDICCQGDVMPPPVPLHGTLPVYDLNITVTPVNDK
APSVTIGDMFIVDEGSSACLCHGVLGAVDPDTNPDELIFHLETPPRNGFLENTLPSPGFE
KSNAGIKVVSFSLLHLNSGFINYIQARHRDTEPTADHFVVSVSDGVHKSTAVPFYIIINP
TNDEPPSLLLNNFTVTEGGMKELTAAILDVADLDAPPDTLTLTVTSPPTHGTLINGIYGL
QMNRYKNMGQDLLRRTLSAHSFTFRELREGMKIVYMHDDTETLQDSFAIQLTDGKHAVQG
TAQVHILAVNDEKPRLLKNTGMEMEAQGHRVISSVVLEAVDQDTPNDQLYYILNAGPKFG
LLQLKTQSGWMDLTPGQNFTQEDVELNFLWYTHTTLTGFKGHDRFVFYLTDVDNPSPPGS
FFISIHTPQKGDIALVTKPVELVEGERVILTTDHLLASDSGSSSEELVYAVSVPPKHGHL
HIVQHPGVPLTSFTQMDVAAHRVSYTHDNSHTEAQDYFSFVITNGVSSKTGSLMFLIDHR
DRIPPTLATHTGLHLTEGSSQSLSSENLLLTDPDTVQENLTYTITHLPQYGRLLLKGLPL
TLAQNRFTQVNINNMDLVYKHLGGPAHIDQFSFLPSDGTNRGYLEYGQLKEDPVVFTIQV
EQLDKTPPSLVSKGTPSTVDILQEGQHVIYITSKDLQVSDPDSPVQELEFTIVRPPHFGH
LENAHTGGYIKGRFTQRDLDQKAIRYIIPADMEVTADSFEFRVTDPAGNTMLPEVLEMRW
SRVELSATCYRVCENAGTLAIQVTRRGNSRDPAYVTIQVEEDTAKVGKDFTHSTAALIQF
DPGVNIKTWNIYLKDDGLEENHEKFDVVLKAQKNTVLGPTDRARVEIIDPRGGRCDPADL
IDETKDQLPARAPPSVHQPQSVPKTEHYQDPHTGIVWEGRPPRGDVPSHGHFLDSSEGRA
QDQPYHPQGKRLLVGRNSHRIHSVIPLMLVEDRLLSSDQRPPAHPDLEITPIWSWTGQIL
SGHKPEEVPLRDSAPNHSDTRKRQRQRKSSKAVSLDCPSGWTHYRKRCYILGPGVASWSS
AQQACSVILHSQLAGIHSMTDMKWMWRFAGKQPFWTGLTGAMGQWTWTDGKPLLFSKLQM
NRDSSSDPSCVLAESQRKWTQKNCITGDEYKYICSAAAHNI
NT seq
6426 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggtcacccttcaacagtcgctgtttctgctggtggtcatcttggactctgct
tgtgctgagagtctggtgcgactgaatcttggcttggatgttacgagaggacagtctgtg
tttgtgacggaaaaagagttacagctaggcgccacgggggcaacagactcctgcaaggtg
gaggtgcttctcaatgaacccgtcactcagagggtgggcaagctcaccccccaggtgttt
gattgccagttcttacctgacgaggtgatgtacgcacacaatggcagccctttgctggag
gaagatgccgtcatgctaagagtttacagattcacggatatggatacgaatattgagacc
ttcctattgcgagtgaggattgtggagcacagcagcaagcttgtggagtttggtagtgtc
ccccttgtggttcaggagttctacggcctctccaatgccctagacagccgggtgttgacc
ttcccaactcgcccagaggttgtttgcacagtgcgactcttgacctctgagacgaatgct
cccacgcttgggcagctggtcacagaggatcccgtccaagcagcccaagagaaggttcta
aatgctgctccaagaaaaggtagacaagccagcatctcctgtcccggaaacagaccctgt
ctccatagcaacagggaggtgcgtttcctgaaggttacctgcagtgagttcctgacttca
ggtctgaagtatcaacatctcagtccgccttctccggagatcgactacatccccatcagg
gtagaactgagagacaaaacctctcgggctttgttagaggcagaaagtgtgtggcttcca
gtcttgatccacggtgcgatgcccaaccaccctccccatgcagccttcatgtccatgttc
atcttggaggtggaccagttcatcctcacccccatgaccactgccgctctggacgccaag
gaccacgagaccccccaggctcggctggtcttcaatgtgacaaagcccccttcagaaggc
tacataacccacctggatgaccacaccaagcctgttggctccttctcctggcaggaccta
aacgacatgaagattgcctatcagccgcccaacagtagtgtgactaaccgcaggaactat
gaggtcgaattcgtggccattgatgattcctttgacaccagttccccaatcatggtggat
ttttcaatccgtacagcagaaacaaatgctcctcgagtgtcctggaacatggggttggat
ctgctggagggccaatcgcggcctatcacctgggagaacctgcagattgtggataatgac
aatatcaatgcagtcactctggtggctgtgngggggcctcttcatgggaaactcagtgtt
cgaggtggaaaaggcttcatgtttaaagtgaaggatcttcgtgagggtgtggtggtgtac
caacactccgacacagacaccacccgagactacatcatctttcgcatcaccgacgaccgt
catagcactcgccacaagttccccatcaacatactgccaaaagatgacacgcctcccttc
ctcattaacaacgtggccttcgaggtgcaggagggagggtgggtgcgggtggaggagtac
atgctcatggcctccgatctggactccagcgatgactacatcctgtaccagctgctcaca
cagccacatgctggggagatggtgaaaaagacctctgcgtatgatgcaggggtccctgtg
agcagcttcctgcagcgagacctgtttcaggggctgatctactaccggcactcaggggag
gaggtgtttgaggactcctttgatttcatcctctctgacagccatcagccgcccaacctc
tcagaccgacagacagtggtggtccaggtgttccctgtcaaagaccagctccctgtggaa
gtgtccggagccgtgcgctccatcactctgagggagaccgaggtggtgtacctcacccag
agccacctccactttagggccccagaacacagcgacgcggacctggcctacgtgatcact
caaccctgcttcagcaccatcaagcctggaatgccggatgcaggaagattgtttttcaca
gacagcagccattccatgaaaaaggattatatgatgccagtgctcaagtcattcactcag
aatgcagtgaaccaccataaagtaggctacatgcctccgatcgaggacatcgggctggag
cctctctatgtgcagtttgtcttctctgtcagtgatcagcatggaggcacgctcactggc
ctcgtcttcaacatcacagtcattcctgtggacaaccagaaaccagagatgttcaccaac
ctgctgcgcgtggaggagggcgggggtgtgttcctgacggaggagcacctgttgatacgg
gatgtggacaccctcccagaagatctgcgcgtgaggctggatgctcctccacgccacggg
aggctggagctgcagggcgtcccgctacaagagacccacagcttctccctgctggacatc
cgagccctgcgagtcaggtacatccatgatgattctgagactgtgaaggacactgcagtc
cttacagttacggacggcaccagctctacgcaggctgaacttttagtgcaggttatgcct
gtgaatgatgagcctccccagttgggcccagggttgcgtgctgggctgtcgtgcgcggag
ggagggcgtgtgcagatcacggtggagtacctgttcgccacagacgcagacagtgacgat
gcgcgcctcacctacatgctggccagagcccccacccatggagagctccaccgagggggg
ggccccgtggacaagttctcccaacaggacctcctgcaaggaacggtctactatatccac
acagggggagaggttggaccctattcagtctcagactctgtgacacttatagtgtctgac
ggagaagcaggaggacaggacatctgttgtcaaggagacgtcatgcccccgcccgtccct
ttgcatggcactctccctgtgtatgaccttaacatcacagtgaccccagtgaatgacaag
gcaccatcagtgaccataggtgatatgtttatagtggacgagggctcctctgcctgtctg
tgtcatggggttcttggagctgtggatcccgacacgaaccccgatgaacttatcttccat
cttgaaacacctcctcgcaatggcttccttgagaacactcttccttctcctgggtttgag
aagagcaatgctggaattaaagtggtatctttcagtcttcttcacctcaattccggcttc
atcaactacatccaggcgagacaccgggatacggagcccacagctgaccattttgtggtg
agcgtcagtgacggagtccacaagtctacggctgtgccgttctacatcatcatcaacccc
accaacgatgagcctccatcgcttcttctcaacaacttcactgtgacagaagggggcatg
aaagagctgactgcggccatcttggatgtagcagatctggatgcccctcccgacaccctg
accctgactgtcaccagccctccaacgcatggcaccctaatcaatggcatctacggcctc
cagatgaatcgctacaagaacatgggccaagatctcctgcggcgcaccctgtctgctcac
agcttcaccttcagagaactcagagaagggatgaagatcgtgtacatgcacgacgacacg
gaaaccctccaggactccttcgccatacagctgacagatggcaagcacgccgtgcagggg
acagcgcaggtccacatcctagcagtcaacgatgaaaagccacgtctgctaaaaaacaca
ggtatggagatggaggctcaaggtcacagggtcatctccagtgtggtgctggaagcagtg
gaccaggacactccaaacgatcaactctactacatcctcaacgctggacccaagtttggc
ctgctgcagctgaagacacagagcggatggatggatctaacaccagggcaaaacttcact
caggaggatgtggagctgaacttcctgtggtacacacacacaaccctcactgggttcaaa
ggtcatgaccgctttgtgttctacctgaccgacgtggacaacccctcaccccctggaagt
ttcttcatctcgatacacactccacagaaaggtgacattgctttggtcactaagccagtg
gagttggtggagggtgagagggtcatcctgaccacagaccacctcctggcctccgacagt
ggcagctcatcagaggagctggtctatgccgtgtctgtgccacccaagcatggccacctc
cacatagtgcagcacccgggggtgccactgacctccttcacccagatggacgtggcagct
caccgtgtcagctatacccatgacaacagccacacggaggcccaggactacttcagcttt
gtcattaccaatggcgtatcctctaagactggctccttgatgtttttgatagaccacaga
gaccgcatccccccaaccctggccacccacacaggcctgcacctcacagaggggagttct
cagtccctctcgtctgagaacctgctgctgacggaccctgacacggtccaggagaacctg
acctataccattacgcatctcccccagtacggccgcctgcttctgaagggcctcccttta
acattagcccaaaaccggttcactcaggtcaacatcaacaacatggacctggtctacaag
cacctgggtggaccagcccacatagatcaattcagcttccttccctcagacggaaccaac
cgaggttacctggagtatggccagctgaaggaagaccccgtggtcttcaccatacaggtg
gagcagcttgataagacccctccgagtctggtttccaaggggacccccagcaccgtggac
attctccaggagggtcagcacgtcatctacatcacctccaaagacctccaggtgtctgac
cccgacagcccggtccaagagctagagttcaccatcgttcggcccccacattttggacac
ttggaaaatgctcatacaggagggtacatcaagggccgcttcacccagagagacctggat
cagaaggccatacgttacatcatcccggccgacatggaggtgactgcagacagctttgag
ttccgggtaacagacccggcaggaaacactatgctgcctgaagtgctggagatgagatgg
tcacgtgtagagctgtctgccacctgctaccgagtgtgtgagaatgcagggacactggcc
atacaggtgacacgcagaggaaacagcagagacccggcctacgtcacaatacaggttgag
gaggatactgccaaagtggggaaggatttcacacacagcactgctgcactcatccagttt
gatccaggtgtaaacataaaaacatggaacatttacctgaaagatgatgggctggaggag
aaccatgagaagtttgatgtggttctaaaggcacagaagaatactgttctgggtccaacg
gacagagccagggtagagattattgacccaagaggaggccggtgtgacccagctgatctt
atagatgagactaaagaccaactgcctgcaagagcgccccctagtgtccatcaacctcag
tctgtgccaaagacagaacactaccaggatccccatactgggattgtctgggaaggccgc
cctccaaggggtgatgttccatctcatggccatttccttgactcttctgaggggagagca
caggaccaaccatatcatccacaaggcaagaggctactggtgggcagaaacagccacaga
atccattcggtgatccccttaatgctggtggaggacagacttttgagctctgatcaaaga
ccacccgctcatccagacttggaaatcacccccatctggtcatggaccggccagatcctc
agtgggcacaaacctgaagaggtccccctcagagactccgcccccaatcattctgacaca
aggaaacgtcagcgccagcgaaagtcgagtaaggcagtgagtctggactgtccctctggc
tggactcactacagaaagcgttgttacatcctcggccctggagtggccagttggagcagt
gcccagcaagcctgctctgtgatacttcacagccagttagctggtattcactccatgact
gatatgaagtggatgtggaggtttgctggaaagcagccattttggacagggctgaccgga
gccatgggacagtggacctggacagatgggaagcctttgttgttctccaaacttcagatg
aacagagattccagttcggaccccagctgtgtgttggctgaatcccaaagaaaatggact
caaaaaaattgcattacaggagacgagtacaaatatatctgttcagccgcagctcataac
atctga
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