Clupea harengus (Atlantic herring): 105904505
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Entry
105904505 CDS
T09045
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105904505 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105904505 (sf3b3)
03041 Spliceosome [BR:
char03041
]
105904505 (sf3b3)
03036 Chromosome and associated proteins [BR:
char03036
]
105904505 (sf3b3)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
105904505 (sf3b3)
Spliceosome [BR:
char03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
105904505 (sf3b3)
Complex B
105904505 (sf3b3)
Complex C
U2 SnRNP specific factors
105904505 (sf3b3)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
105904505 (sf3b3)
TFTC complex
105904505 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
105904505
NCBI-ProteinID:
XP_031420224
Ensembl:
ENSCHAG00000010639
UniProt:
A0A6P8F5K5
LinkDB
All DBs
Position
3:5731691..5758032
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISHAIHGNFSGTKQQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG
IIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNMFEKVHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GADGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVASAMCVLKTGFLFVATEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRKHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLVLIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGAGQWASLVRLINPIQGTTLDLVQLEQNEAAFSVAICRFANGG
DDWYVLVGVARDMILNPRSTSGGFIYTYRLAGGGDKLEFVHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIYTIGQRVVISDIQESLFWVRYKRNENQ
LIIFADDTHPRWVTTACLLDYDTMASADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacttgacgttgcagcgagccacggggatctcccatgccatccatgga
aacttttcaggaaccaaacaacaggagatcgttgtctcaaggggaaagatccttgaactt
ctacggccagatgccaatacagggaaagttcacacgctgctcaccatggaggtgtttggc
atcattcgttctctcatggctttcaggcttactggaggaactaaagactacatagtggtg
ggcagcgattcaggtcgtattgtgatcctggagtatcacccatccaagaacatgtttgag
aaagtgcaccaggagacttttggcaagagcggctgcaggcgcattgtgccgggccagttc
cttgctgtggatccaaagggcagagctgtcatgatcggggccatagagaagcagaaactg
gtgtacatcctgaacagagacgcggccgcacgtctcaccatctcctccccgctggaggca
cacaaggccaacacgctggtgtaccatgtggtgggggtggacgtgggctttgagaacccc
atgttcgcctgtctggagatggactatgaggaggcagacaatgaccccaccggagaggcc
gctgcgaacacgcagcagacactgaccttctacgagctggacctgggcctcaaccacgtg
gtgcgcaagtacagcgaagccctggaggagcacggcaacttcctcatcacagttcctgga
ggagcagacggccccagtggagtgctcatctgctctgagaactacatcacctacaagaac
tttggggaccagcctgatatccgctgccccatcccacgcagaaggaatgaccttgatgac
ccagagagaggcatgatcttcgtgtgctcagccacacacaagaccaagtccatgttcttc
ttccttgcccagacggagcagggagacatcttcaaggtcaccctggagactgacgaggag
atggtcacagagattcggatgaagtatttcgacaccatccctgttgcatcagccatgtgt
gtgctgaagaccggcttcctgtttgtggccacagagtttggcaaccattacctttaccag
attgctcacctgggcgatgacgacgaggagccagagttctcctccgccatgccactggag
gagggtgacacctttttcttccagccacgacccctgaagaacctggtgctggtggacgag
caggagaacctgtcgcccataatgtcctgccagattgctgatctggccaatgaggacact
ccccagttgtacgtggcctgtggaagaggccccaggtccacactaagagtgctgagacac
gggctggaggtgtcggagatggctgtgtccgagctgcccggtaaccccaatgctgtatgg
acggtacgcaagcacgtggaagatgagtttgacgcctacatcatcgtgtctttcgtcaac
gccacactggtgctgtccatcggagagactgtcgaggaagtgacggactccggcttcctg
ggtaccacccccaccctctcctgctcgctgctgggggaagatgctctggtgcaggtgtac
ccagatggcatccgtcacattcgtgcagacaagcgtgtcaacgagtggaagaccccgggc
aagaagaccatcgtgcgctgtgccgtcaaccagaggcaggtggtcattgccctgacggga
ggggagctagtgtacttcgaaatggacccatcaggccaactgaacgagtacacagagagg
aaggaaatgtctgctgatgtagtgtgcatgagcctggccaacgttcccccaggagagcag
cgctcccgcttccttgccgtgggactggtggacaacaccgtccgcatcatttccctcgac
ccctcggactgtctgcagccgttgagtatgcaggccctgcccgcacagcccgagtccctg
tgcatcgtggagatgggcggcgttgagaagcaggacgagctgggggagaagggcaccatc
ggcttcctctacctcaacattggcttgcagaacggtgtgttgctaaggaccgtgctggac
ccggtaaccggagacctgtctgacacacgcacccgttacctgggctcgcgaccagtcaag
ctcttccgagtcagaatgcaaggacaggaagctgtgctggccatgtcgagccgctcgtgg
ctgagctactcgtaccagtcgcgtttccacctgacgccactgtcctacgagaccctggag
tatgcgtcaggcttcgcctccgagcagtgccctgagggcattgtggccatctccaccaac
acactcaggattttggcactggagaagttgggcgctgtgttcaaccaggtggccttcccc
ctgcagtacacgccgcgcaagtttgttatccaccccgagaccaataacctggtgctgatc
gagacggatcacaatgcctacacagaggccaccaaggcccagcgcaagcagcagatggct
gaggagatggtggaggcggccggcgaggacgaacgggagcttgcggcggagatggccgct
gccttcctcaacgagaacctcccggaagccattttcggggcgcccaaagctggcgctggc
cagtgggcctcactggtgcggctgatcaaccccatccagggcactactctggacctggtc
cagctggagcagaatgaggccgccttcagtgtggccatttgtcgcttcgccaacgggggc
gacgactggtatgtgttggtgggcgtggccagggacatgatcctgaaccctcggtctacg
agcggcggcttcatctacacctatcgcctggcggggggcggagacaaactggagtttgtg
cacaagaccccggtggaggacgtcccgctggccattgcaccattccaaggacgggtgctg
gtgggagttgggaagctgttgcgcatctacgaccttggcaagaagaaactgctgcgcaag
tgtgagaacaagcatgtgcccaatctggtgactggcatctacaccattgggcagcgggtg
gtcatatccgacatccaggagagcctgttctgggtgcgctacaagcgtaatgaaaaccag
ctgatcatctttgcagacgacactcacccgcgctgggtcaccactgcctgtctgctggac
tacgacaccatggcttctgctgacaagtttggcaacattagcattgttcgtcttcctccc
aacactagcgatgatgtagatgaagaccccactggaaacaaggcattgtgggatagaggt
ctcctcaacggtgcttctcagaaggcagaggtgatcatgaactatcacattggggagaca
gtgctgtccctgcagaagaccacactgatccccggaggctccgagtcgctggtctacacc
accctgtcagggggcattggcatactggtgcccttcacctcccatgaggatcatgatttc
ttccagcacctagagatgcacatgcgttccgagttccctccgctgtgcggcagagaccac
ctcagcttccgctcctactacttccctgtgaagaatgtgattgacggggacctgtgtgag
cagttcaactccatggacccccataagcagaagagtgtggcagaggagctggaccggacg
cccccagaggtctccaagaagcttgaggacatccgcacacgatacgctttctaa
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integrated database retrieval system
