Clupea harengus (Atlantic herring): 105904512
Help
Entry
105904512 CDS
T09045
Symbol
siah1
Name
(RefSeq) E3 ubiquitin-protein ligase Siah1 isoform X1
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04115
p53 signaling pathway
char04120
Ubiquitin mediated proteolysis
char04137
Mitophagy - animal
char04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105904512 (siah1)
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
105904512 (siah1)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
105904512 (siah1)
09143 Cell growth and death
04115 p53 signaling pathway
105904512 (siah1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105904512 (siah1)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105904512 (siah1)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
105904512 (siah1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
Trm112p
TerY_C
Motif
Other DBs
NCBI-GeneID:
105904512
NCBI-ProteinID:
XP_012687860
UniProt:
A0A6P3W392
LinkDB
All DBs
Position
3:complement(5794525..5812906)
Genome browser
AA seq
335 aa
AA seq
DB search
MSRAVRQQPVYSWKGVLKLFTCIATRTASSKPKEVNPFQEKTRALLGNHMDDEMSRQPAP
ALPTGTSKSTPSQRVPTLSGTTASNSDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRP
KLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEVTLPHTDKAEHEELCEFRPYS
CPCPGASCKWQGSLDAVMPHLLHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGF
HFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGI
ATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgtgccgttaggcagcagcctgtctactcgtggaagggggtgctcaagctgttc
acgtgcatcgccacccgcaccgccagcagcaagcctaaagaggtcaacccatttcaagag
aagacgcgagccttacttgggaatcatatggacgacgaaatgagtcgccagcctgcccca
gcgctgcccacaggaacctccaagagcaccccttcccaacgcgtccccaccctgtcgggc
accaccgcctccaacagcgacctggccagcctgttcgagtgccccgtgtgcttcgactat
gtgctgcctcccatcctgcagtgccagagcggccacctagtgtgcagcaactgccggcca
aagctgacgtgctgccccacgtgccgcgggccgctgggctccatccgcaacctggccatg
gagaaggtggccaactcggtgctgttcccctgcaaatacgcctcgtcgggctgcgaggtg
acgctgcctcacacggacaaggcggaacacgaggagctgtgcgagttccggccgtactcg
tgcccctgcccgggcgcgtcgtgcaagtggcagggctcgctggacgccgtcatgccgcac
ctgctgcaccaacacaagtccatcaccacgctgcagggcgaggacatcgtcttcctggcc
acggacatcaacctgccgggcgccgtggactgggtgatgatgcagtcgtgcttcggcttc
cacttcatgctagtgctggagaagcaggagaagtacgacgggcaccagcagttcttcgcc
atcgtgcagctgatcggcacgcgcaagcaggcggagaactttgcctaccggttggagctg
aacggccaccggcgtcggctcacttgggaggccacgccacgctcgatccacgagggcatc
gccacagccatcatgaacagcgactgcctggtgttcgacacctccatcgcacagctgttt
gccgagaacggcaacctgggcatcaacgtcaccatatccatgtgctga
DBGET
integrated database retrieval system
