KEGG T09045: 105904522

Clupea harengus (Atlantic herring): 105904522

Entry

105904522         CDS       T09045

Symbol

nudt21

Name

(RefSeq) cleavage and polyadenylation specificity factor subunit 5

K14397

cleavage and polyadenylation specificity factor subunit 5

Organism

char Clupea harengus (Atlantic herring)

Pathway

char03015

mRNA surveillance pathway

Brite

KEGG Orthology (KO) [BR:char00001]
09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    105904522 (nudt21)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:char03019]
    105904522 (nudt21)
Messenger RNA biogenesis [BR:char03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor Im (CFIm)
     105904522 (nudt21)

SSDB

Motif

Pfam:

NUDIX_2

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

Ensembl:

UniProt:

LinkDB

Position

3:5835727..5839109

AA seq 228 aa
MSVVPPNRSSTGWPRGVNQFGNKYISPPAKPLSLERTINLYPLTNYTFGTKEPLYEKDSS
VAARFQRMREEFEKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVE
GLKRLMTEILGRQDGVKQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQL
QEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN

NT seq 687 nt +upstreamnt +downstreamnt
atgtcggtcgttccacccaaccgatcgtccaccggttggccccgtggagtcaatcaattc
gggaataaatacatcagcccgccggccaaacctctttccctggagcgaaccatcaacctg
taccctctaacaaattacacatttggcacaaaagaacctttgtatgagaaagacagttct
gtagctgctcggttccaacggatgcgcgaggagttcgagaagattggaatgagacgaacc
gtggagggagtcctcatcgtacacgaacacagactgcctcacgttcttctgctgcagctc
ggaacaactttctttaaactaccagggggagagttgaatccaggtgaagatgaagtcgaa
ggcctaaaacgtttgatgacagagattttggggaggcaagacggagtgaagcaggactgg
gtgattgatgactgcattggaaactggtggaggccaaactttgagcccccacagtatccc
tacattccagcacatataaccaagcccaaagagcataaaaaactgttcctggtccagcta
caggaaaaagcactgttcgccgtacctaagaactacaaactggtggcagcacctctgttt
gaactgtacgacaatgctcctggctatgggcccatcatctccagtctcccacagctgtta
agcagatttaactttatttacaactga

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