Clupea harengus (Atlantic herring): 105904606
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Entry
105904606 CDS
T09045
Symbol
cnot6a
Name
(RefSeq) CCR4-NOT transcription complex subunit 6a
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105904606 (cnot6a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105904606 (cnot6a)
Enzymes [BR:
char01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
105904606 (cnot6a)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105904606 (cnot6a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105904606 (cnot6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
105904606
NCBI-ProteinID:
XP_012687966
Ensembl:
ENSCHAG00000007040
UniProt:
A0A6P3W3C2
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Position
8:complement(448789..460677)
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AA seq
557 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEESTNGKKSYWAELEITGKVKNLSTSLWSLTHLTALYISD
NSLSRIPPDIAKLHNLVYLDVSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLHTLGLKGNPLAQEILNLYQEPDGTRRLLNYLLDNLAGTKRVSAEPPPQRSWIPLQDPD
RTRPTALFSVMCYNVLCDKYATRQLYGYCPPWALNWEYRKKSIMQEIMNCSADVISLQEV
ETEQYYNYFLPELKEQGYEGFFSPKSRARTMSECDRKHVDGCAIFYKTDKFSLVQKHTVE
FNQLAMANSEGSEVMINRVMTKDNIGVAVLLEVRKEMMEQSAGKPLHGIEKQLLLVANAH
MHWDPEYSDVKLVQTMMFLSEVKNIVDKATRSLKLSSVSGEINPIPLCLCADLNSLPDSG
VVEYLSTGGVDSTHKDFKELRYIDCLANFNCNGKNGTSNGRITHGFKLKSAYEDGLMPYT
NYTLDFKGIIDYIFHSQPLLNVLGVLGPLDTQWLSENNISGCPHPHVPSDHFSLFAQLEL
ILPYPPSVNGIHLPGRR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggagaaatatgatcccccagatccaagacgcatgtatacaataatgtcaagt
gaagaatcaaccaacgggaagaagtcatactgggccgaattggagataactggtaaagta
aagaatctgagtacatccttatggtcattgactcatctcacagcactgtacatcagcgac
aactccctttcacgcatcccgcccgacattgccaaactacacaacctggtgtacctggat
gtgtcgtccaataaaataaggagtctgccagccgagcttggcaacatggtgtctctcagg
gaactgcttttgaataacaaccagttgcgggttctaccatttgaacttgggaagctgttt
cagttacacacactgggcttgaaagggaacccacttgcacaagaaatcttaaacctctac
caggaacctgatggaacacgccggcttttgaactacctgctggacaatcttgcaggcact
aaacgtgtgtccgctgagccgccccctcaacgctcctggatacctctgcaggacccagat
aggacaagaccaacagccctgttctcagtcatgtgctacaatgtgctctgtgacaagtac
gccacacgccagctctacggctactgcccaccttgggctctcaactgggagtacaggaag
aagtccatcatgcaggagatcatgaattgcagtgcggacgtcatcagcttacaggaagtt
gagactgagcagtactacaactacttcttgccggagctgaaggagcagggatatgagggc
ttcttcagcccaaagtcacgagctaggaccatgtcggagtgtgaccgcaagcatgtggat
ggctgtgccatattttacaaaacggacaagttcagtttggtccagaaacacaccgtggag
ttcaaccagctggccatggccaactctgaaggctcagaggtcatgatcaatcgagtgatg
accaaggacaacattggcgtggcagttcttctggaggttcgcaaagaaatgatggaacag
tcggctggcaagcctctgcatggcatagagaaacagctcctcctggtggccaatgcccac
atgcattgggacccggagtactcggatgtgaagctggtgcagaccatgatgttcttgtct
gaggtgaagaacatcgtggacaaggccacgcgcagcctcaagctctcctccgtctccggg
gaaatcaaccccattcccctctgcctgtgtgctgacctgaactccctgcctgactctgga
gtggttgagtaccttagtacaggtggggtggacagcacacacaaggacttcaaggagctg
cgctacatcgactgcttggcaaacttcaactgtaatggcaagaacggcacgtccaacggc
aggatcacccatggcttcaagttgaagagtgcctatgaggatggtctgatgccgtacacc
aactacacattggacttcaagggcatcatcgactacatcttccactctcagcctctgctc
aacgtcttgggtgttttgggtcctctcgatacccaatggctctctgagaacaatatcagc
ggctgtcctcacccccacgtcccctctgatcatttctcgctgtttgcacaactggagttg
attcttccctacccgccctcagtcaatggaatccacctgcctggacgcaggtag
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