Clupea harengus (Atlantic herring): 105904611
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Entry
105904611 CDS
T09045
Symbol
rbm22
Name
(RefSeq) pre-mRNA-splicing factor RBM22
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105904611 (rbm22)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105904611 (rbm22)
Spliceosome [BR:
char03041
]
Complex B
Other components
Prp19-related factors
105904611 (rbm22)
Complex C
105904611 (rbm22)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
RRM_occluded
zf_CCCH_4
Torus
Nup35_RRM_2
zf-CCCH_2
zf-CCCH
zf-CCCH_4
RRM_3
zf-CCCH_10
Motif
Other DBs
NCBI-GeneID:
105904611
NCBI-ProteinID:
XP_012687973
Ensembl:
ENSCHAG00000007414
UniProt:
A0A6P3W2V7
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Position
8:complement(522834..527621)
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AA seq
428 aa
AA seq
DB search
MATSLGANTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
VRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGLSVKDDVPKSDVNKEYYTQN
MEREIAGTDGTRAVGALGKAPSSSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLMRASAMPRLDAPEDKTITTLYVGGLG
DTITDSELRNHFYQFGEIRTITVVPRQQCAFIQFATRGAAESAAEKSFNKLIIHGRRLNV
KWGRSQGSRGKEREKDGVAEGGMRLEPVPGLPGALPPPPVSEEEGPANYFNLGPSSAPTV
MNMGLPPPPGVTMPPPPGFGPPMFHSMDGMGAPMPPPMPLRLPGPVHYPSQDPQRMGAHA
HAARHGGT
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtctttaggagctaacacatacaacaggcaaaactgggaagatgcggacttc
ccaattctctgccaaacatgtctaggagagaatccttacattcgcatgaccaaagagaag
tatggaaaggagtgcaagatttgtgcccgtcccttcactgtgttccgctggtgccctggt
gtgagaatgcgcttcaagaagactgaggtgtgccagacatgcagcaaaatgaagaatgtc
tgccagacttgcttgctggaccttgagtatggtctgcccattcaggtccgcgacacaggc
ctttccgtcaaagatgacgtgccaaagtcagatgtgaacaaagaatactacactcagaat
atggagagagagattgccggcacggatgggacgagggcggtgggagcacttggtaaggca
ccgagctccagtgatatgcttctgaagcttgcccgcaccacgccctactacaagaggaac
aggccacacatctgttccttctgggtgaagggagagtgcaagagaggagaggagtgccct
tacagacatgagaaaccaactgatccagatgaccctctggctgaccagaacatcaaggac
cgttactatggcatcaatgacccggttgctgacaaactcttgatgcgggcatctgccatg
cccaggcttgatgctccagaggacaagaccattaccactctttatgtgggaggcctagga
gataccatcactgactcagaactcaggaaccacttctaccagtttggggagattcgtacc
atcacagttgtccccaggcagcagtgtgctttcatccagttcgctacgcgcggggcggct
gagtcagcggctgagaagtccttcaacaagctgatcatccatggccgcagactcaacgtc
aagtggggcaggtcccagggatctcgtggaaaggagagagaaaaagacggagtggctgaa
ggcggcatgcgactggaaccggtgcctggacttcctggagcattgcctccgccgcctgtg
tccgaagaggagggccccgccaattacttcaacctgggccccagcagcgcccctacggtg
atgaacatggggctgccgccgccaccgggggtcaccatgcccccacctccaggctttggt
cctccaatgttccactctatggatggcatgggtgctcctatgcccccgcccatgccatta
aggcttcccggtccggtgcactacccttcccaggatcctcagcgcatgggtgcccatgct
catgcagctcgccatggaggcacatag
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