Clupea harengus (Atlantic herring): 105904814
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Entry
105904814 CDS
T09045
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105904814 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105904814 (ddx6)
03036 Chromosome and associated proteins [BR:
char03036
]
105904814 (ddx6)
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105904814 (ddx6)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
105904814 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
105904814 (ddx6)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Gene silencing
piRNA pathway
105904814 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
105904814
NCBI-ProteinID:
XP_012688203
Ensembl:
ENSCHAG00000024686
UniProt:
A0A6P8FN25
LinkDB
All DBs
Position
9:19246471..19258694
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AA seq
480 aa
AA seq
DB search
MTTARTESQVILGLSNQNGQLRGSGKTAAGPGGGSPQQPASQVKATSTINNGSSQPAPTN
TVIKPGDDWKKSLTLPPKDTRMRTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQ
EESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCIQALVLVPTRELALQVSQI
SIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVSQVQMI
VLDEADKLLSQDFLPMMEETLSFMCKQRQILLYSATFPLSVQKFMNAQLQKPYEINLMEE
LTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFY
IHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRIG
RSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSSIDKSLYVAEFHPESGEELKL
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgactactgctagaacagagagtcaagtgattctgggcttgtccaatcagaatggccag
cttcggggctcagggaaaacagcagctggcccaggtggaggaagtcctcaacaaccagca
agccaagtgaaggccactagcacaatcaacaatggcagttcccagccagcaccaacaaac
acagtcatcaaacctggagatgactggaagaaaagcctaacgctccctccaaaagacacg
agaatgaggacctcggatgtgactgcaaccaaggggaatgaatttgaagattactgcttg
aagcgggaattgcttatggggatctttgagatgggctgggagaaaccttcccctattcag
gaggagagcattcctattgctttgtcggggagggacatcctggccagggcgaagaacggc
actgggaagagcggagcctacctcatccccttacttgaacgcattgacctaaagaaggac
tgcatacaagcattggtcctcgttcctactcgagagctggccctgcaggtgagtcagatc
agcatccaggtcagcaaacacatgggtggagttaaagtcatggcaactactggtggcact
aaccttcgtgatgacatcatgcgacttgatgagacggtacatgtggtcattgccacacca
ggaaggatcttagacctcattaaaaaaggagtggcaaaagtcagccaggtgcagatgatt
gtgttggatgaggctgacaaactcctgtcccaggactttttgccgatgatggaggagact
ttgagcttcatgtgtaagcagaggcaaatcttgttgtattctgctacctttcctctcagt
gtgcagaagttcatgaatgcccaactgcagaagccttacgagattaaccttatggaggag
ctgactctgaagggtgtgacccagtattatgcctacgtcacagaaaggcagaaagtgcac
tgtcttaatactctgttctctaggctccaaattaatcaatcaataatcttctgcaactca
tcccagagagttgagctcctggctaagaaaatctctcaacttggctactcctgtttctac
attcacgcgaagatgagacaggaacaccgtaaccgtgtattccatgacttcagaaacggt
ctctgccggaatctagtctgcactgatctcttcaccagaggaattgacattcaagctgtg
aatgtggtgataaacttcgactttcccaagcttggagagacataccttcatcgtattggc
agatctggacgctttggacatttgggtctagccatcaatctgatcacctatgacgatcgc
ttcaacctgaagagtatagaggagcagttgggaacagagatcaaacccatccccagcagc
atcgataagagtctctatgtggccgagttccaccctgagagtggggaggagctgaagctg
taa
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