Clupea harengus (Atlantic herring): 105904817
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Entry
105904817 CDS
T09045
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105904817 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105904817 (dhx36)
03012 Translation factors [BR:
char03012
]
105904817 (dhx36)
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105904817 (dhx36)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105904817 (dhx36)
Translation factors [BR:
char03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105904817 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
HA2_C
Helicase_C
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
PI_PP_C
NB-ARC
PhoH
TsaE
AAA_16
NACHT
Motif
Other DBs
NCBI-GeneID:
105904817
NCBI-ProteinID:
XP_012688206
Ensembl:
ENSCHAG00000021541
UniProt:
A0A6P3W2M4
LinkDB
All DBs
Position
9:18858880..18892532
Genome browser
AA seq
1024 aa
AA seq
DB search
MSYGHGGRRGRRGGRRFGDGSDERWERGAGQSSGGYQRNSGWESREDQGRGGGGPRGKHP
PHLKGREIGLWYAKSGGVKRSEQERKSRAVVQMDQSREQHITELLNSVQRVPPGAGMKTD
ASTSQCWRSKPEESSHSYFDGDEPPEEVPKIKTEIKEEKQETEMISAKDLEYLFQDIIRK
PTLDQELKKDLQLKRADSKYLDMLKFREKLPSYGMREELVQLIQANQVVVVSGETGCGKT
TQVTQFILDSYIERDMGSLCRVVCTQPRRISAISVAERVSSERAESVGNGNSCGYQIRLQ
SRLPRKQGSVLYCTTGIILQWLRSDQHLSSISHLVLDEIHERNLQSDVLLTIVKDLLSVR
DDLKVVLMSATLNAEKFSKYFGNCPMVHIPGFTYPVQEYLLEDVLEMLRYQPQKKERRPR
WKRGFMQGQVSRPEKEQKEAEYRESWPCYARTLRDKFSDSTIDVMEMMDDDDKIDLELIV
ELIRHIVMKEDDGAILVFLPGWDNISGLNDLLMAQQMFKSDKFVIIPLHSLMPTVNQTMV
FKRPPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQNNISTMTPEWVSLANA
KQRKGRAGRVSPGKCYHLYNGLRASLLDSYQLPEIQRTPLEELCLQIKILKLGSIASFLL
NALDPPSEKTIQLAITHLIDLNALDRDEELTPLGFHLARMPVEPHIGKMILFGALLGCLD
PVLTIAASLSFKDPFFIPLGKEKLADNRRKILSKNTKSDHLTIVNAFWGWEDAKRRGYRY
EKDYCWDNFLSANTLQMLHNMKSQFSEHLLTAGFVSCKDPKDPSANINSENEKLIKAVIV
AGLYPKVAKIRAGLNKKRPTPPKVYTKSDGKVCIHPKSVNAEETQFRYTWLIYHLKMKTS
SIFLYDCTEVSPFSLLFFGGDISIQKDQDQDTIAVDEWIVFQSPARIAHLVKDLRKELDF
LLEEKIKNPKPVNWSNRSSKDCAVISAIIDLITTQEADNRSGYTDRSGYTDRSAAPRGDD
WYDQ
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgagttatggtcatggtggcagaagaggccgaagaggaggtcgcaggtttggcgatggg
agtgatgaaagatgggagcgaggagcagggcaaagtagcggaggttatcagaggaactcc
ggctgggaatcacgggaggatcagggccgtggaggcggtggcccacggggtaaacacccg
ccacatctgaaaggcagagagattggcttatggtacgccaaatccggtggtgtcaaaaga
tccgaacaggagaggaaatcaagggccgtggttcagatggatcagtcaagagagcaacac
atcactgaactactaaactcagttcaacgagtgccacccggagctggcatgaaaacggac
gcctccacatcacagtgctggagatctaagccagaggagagcagccacagttactttgat
ggggatgaacctccggaggaagtacctaagataaaaaccgaaattaaagaagaaaagcaa
gaaactgaaatgatcagcgccaaagaccttgaatacctgtttcaggacattatacgcaaa
ccaacccttgaccaagagctcaagaaagacttgcagctaaaaagggctgactctaagtat
ttggatatgttgaaattcagggaaaaacttccatcatatggaatgagagaggagctggtc
cagctaatccaggccaaccaggttgtggtggtgagcggtgagactggatgtgggaagacc
actcaggtcacacagttcatcctggacagttacatcgagagagacatggggtccctctgc
agggtggtgtgcacccagccacgccgcatcagtgctatctcggttgcagagagagtgtct
tcagagcgtgctgagagtgtgggcaatggaaactcttgtggataccagattcgacttcag
agccggttaccacggaaacaaggctctgttttgtattgtacgacgggcattattcttcag
tggctccgctccgatcaacacctgtccagcattagccacctggttctggatgagatccat
gagcggaacctacaatctgatgttcttctcactattgtgaaggacctgctgtcggtccga
gatgacctgaaggtggttctcatgagcgctacactcaatgcagaaaaattcagcaagtac
tttggtaactgcccaatggttcatattcctggcttcacatacccagtccaggagtacctg
ctggaggacgtgctggagatgctcagataccagcctcagaaaaaggagcgcaggcccagg
tggaagcggggcttcatgcagggccaagtgtcccgcccagagaaggagcagaaggaggcc
gagtaccgggagagctggccctgctacgcacgcaccctcagggataagttctcagacagc
accattgacgtgatggagatgatggatgacgatgacaaaatcgacctggaattgatcgtg
gaactcattagacatattgtgatgaaagaggatgatggggccattctggtcttcctgcct
ggctgggacaacattagtggtcttaatgaccttctcatggctcagcagatgttcaagtca
gataagtttgtgataattccactccattctctcatgcccacggtcaaccagacaatggtc
ttcaaaagacctccacctggagtccggaagattgtgatagccactaacattgctgaaacc
agtatcactatagacgacgtggtgtatgtaatagacggtggcaagattaaggagacgcac
tttgacacccagaacaacatcagcaccatgacgccggagtgggtgagcctggcgaatgcc
aagcagaggaaaggtcgcgctggcagggtgtctccaggaaagtgctaccacctgtacaat
ggcctgcgggcaagcctgctggacagctaccagttgcccgagatccagcgcaccccactg
gaggaactgtgtctccagattaagattctcaagctgggctccatagcctctttcttgctt
aatgctttggaccccccttctgagaagaccatccagctggccataacacacctcattgac
ctgaacgctcttgacagagatgaggagctgactcctctgggcttccatctggctcgtatg
ccggtggagccgcacattggcaagatgattctgtttggggctctgctcggctgcctggac
ccagtgctcaccatcgccgccagcctcagcttcaaggatcccttcttcattcctctggga
aaggaaaagctagcagacaacaggaggaaaatcctttccaagaacaccaagagtgaccat
ctcactattgtgaatgcattctggggctgggaggatgccaagcggcgaggatacagatat
gagaaagactactgctgggacaacttcctctccgccaatacactccagatgcttcacaac
atgaagagccagttttctgagcacttgctgactgccggctttgtcagctgcaaggacccc
aaggacccgagcgccaacatcaactcagagaatgagaaactcatcaaagcagtcattgta
gctggtttgtatccgaaagtggccaagatccgggctggcctaaacaagaagaggcccacg
ccgccaaaggtgtacactaaatcagatggaaaagtgtgtattcatcccaagtccgtaaat
gcagaggagacccagttccgctacacgtggctcatttaccacttaaaaatgaagacttcc
agtatattcctgtatgactgcacagaggtgtctccgttctccctgctcttcttcggcggg
gacatctccatccagaaggaccaggatcaggacaccatcgctgtggacgaatggatcgtc
ttccagtctccagcacgcatcgcccatttagtcaaagacctaaggaaggagctggacttc
ctcctggaagagaaaatcaagaacccaaagccagtgaactggagcaaccgcagctccaaa
gactgtgcagtcatctccgccatcattgacctgatcaccacacaggaggctgacaacagg
agtggctacacagacaggagcggctacacagacaggagcgctgcccctagaggcgacgac
tggtatgaccagtga
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