Clupea harengus (Atlantic herring): 105904866
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Entry
105904866 CDS
T09045
Symbol
taf6l
Name
(RefSeq) TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105904866 (taf6l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
char03021
]
105904866 (taf6l)
03036 Chromosome and associated proteins [BR:
char03036
]
105904866 (taf6l)
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
105904866 (taf6l)
Coactivators
SAGA/TFTC/STAGA complex
105904866 (taf6l)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
105904866 (taf6l)
STAGA complex
105904866 (taf6l)
TFTC complex
105904866 (taf6l)
SAGA complex
105904866 (taf6l)
SLIK complex
105904866 (taf6l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
CENP-S
Motif
Other DBs
NCBI-GeneID:
105904866
NCBI-ProteinID:
XP_012688268
Ensembl:
ENSCHAG00000012510
UniProt:
A0A6P3W389
LinkDB
All DBs
Position
18:11229313..11235977
Genome browser
AA seq
647 aa
AA seq
DB search
MTEREERRFAEVSRESVKLMAETSGVELSDDVAALLAEDVCYRLREATQSSSQFMRHAKR
RKLTVEDFNRALRWSNVDSLCGFGSQEPLPFRPAKEGELFFVEDRDINLVELALATNIPK
GCAETMVRVQVSYLDGKGNLEPQGTVPSAVQSLSEDLLKYYQQITRAILGEDPHLMKVAL
LDLQSNSKIAALLPYFVYVISGVKSVSHDLEQLNRLLHMVRSLVQNPYLYLGSYVRSLVS
SVMYCILEPLAASINPLNDHWTLRDYAALLLSHIFWTHGDLVSGLYHQILLSLQKVLSDP
VRPLCSHYGAVVGLHALGWKAVERVLYPHLPAYWANLQAVLDDYSVSNAQVKADGHKVYG
AILVAVERLLKMKALSLSQPAEGEAGNQQGISGAVLGFRESSPGLSPPPEPLAEAGLGIA
SHLQAGGTGCPWEDWTPVPLPAMYSELYSFFGDSLAVRFSTGPELKPCSASAPTQNGTDR
RKEPGGGAGGASGGTDTARKMPQLTANLSISPRQDGSPRTEPAPPSLAATAPGRSLARSS
SSSSSVQRSRSSASRPGQRSAGPSRDIFPKARFPTPQAGTPTFSFLINGRQMGRRCQGRR
FQTSFSPPAGLTTLPPRAYAHKLPVIGRVSKPVRRWTCSHYSLHLPL
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaagagaggagaggcgtttcgctgaagtatcccgagaatcagtcaaactgatg
gctgagacctcaggggttgagctcagcgacgatgtggctgctcttctcgccgaagatgta
tgttaccgactcagggaggccacacaaagtagctcccagtttatgcggcacgccaagaga
cggaaactgacagtggaggacttcaacagagctctccgttggagcaatgtagactcttta
tgcggttttggctcccaagagccattgcctttccgccccgccaaagaaggggagctcttc
tttgttgaggatcgggacattaacctggtggagttggcccttgccacaaatattccgaaa
ggctgtgcagagaccatggtgcgagtgcaagtgtcctacctggatggcaagggcaacctg
gaacctcaagggactgtacccagtgctgtccagtcactgtctgaagacctcctaaagtat
taccagcagatcactcgagctatacttggtgaagacccacacctcatgaaggtggcacta
ctggatcttcagtccaactccaagattgctgctcttctgccatactttgtgtatgtcatc
agtggggtgaagtcggtgagccacgacctggagcaactgaacaggctgctgcacatggta
cgcagtctggtgcagaacccctacctgtacctgggctcgtacgtgcgcagcttggtgtcc
agcgtcatgtactgcatcctggagcctctggctgcctccatcaacccgctcaacgaccac
tggaccctgcgtgactacgccgcccttctgctcagccacatcttctggacccacggagac
cttgtgagtggcctgtaccaccagatcctgctgtctctgcaaaaggttctgtctgacccg
gtccgacccctctgctctcattacggggcagtagtgggcctgcacgccctgggctggaag
gctgttgagagggtgctgtatccccacctgccagcctactgggccaacctgcaagccgtc
ctggacgattactctgtctcaaacgcacaagtcaaggcagatggacacaaggtctatgga
gccatcctggtggcagtagagcgcctgctgaagatgaaggcactgagtctatctcagcct
gcagagggagaggcagggaaccagcagggtatcagtggggcagtgctgggcttcagagag
agctcaccgggcctcagtcccccaccagaaccgctggccgaggcgggcctgggcatcgcc
agccacctgcaggcgggcggcaccgggtgcccttgggaggactggacccccgttcccctc
ccggccatgtacagcgagctctactcattcttcggcgacagcctggccgtgcggttcagc
actggcccggagcttaagccctgctcggcatcggctccgacccagaatgggaccgacagg
aggaaggagcctggaggaggggctggcggggccagtggggggacggacacggcgcgcaag
atgccccagctgacggccaatctcagcatcagcccgcggcaggatggaagcccacggaca
gagccggcgccacccagtctggctgcaactgccccgggaaggtctctcgcccgatcctcg
tcatcctcttcctcagtccagcgttcccgctcttctgcctcgcggcctggtcagcgttcg
gcagggccgtcccgcgacatcttccccaaagcccgcttcccaacgccacaggcaggcacc
cccaccttctccttcctcatcaacggacggcagatgggtcgccgttgccaggggcgacgc
ttccagacgagcttcagccccccggctgggctgaccactctgccgccgcgcgcctacgcc
cataagctgcccgtcattggacgcgtcagcaagccggtgcgccgctggacctgctcccac
tattctctgcacctgcctctttga
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