KEGG   Clupea harengus (Atlantic herring): 105904927
Entry
105904927         CDS       T09045                                 
Symbol
sem1
Name
(RefSeq) 26S proteasome complex subunit SEM1
  KO
K10881  26 proteasome complex subunit DSS1
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03050  Proteasome
char03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03050 Proteasome
    105904927 (sem1)
  09124 Replication and repair
   03440 Homologous recombination
    105904927 (sem1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:char03019]
    105904927 (sem1)
   04131 Membrane trafficking [BR:char04131]
    105904927 (sem1)
   03051 Proteasome [BR:char03051]
    105904927 (sem1)
   03400 DNA repair and recombination proteins [BR:char03400]
    105904927 (sem1)
Messenger RNA biogenesis [BR:char03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX-2 complex
     105904927 (sem1)
Membrane trafficking [BR:char04131]
 Exocytosis
  Tethering complex
   Exocyst complex assembly proteins
    105904927 (sem1)
Proteasome [BR:char03051]
 Eukaryotic proteasome
  Regulatory particles
   PA700 (19S proteasome)
    non-ATPase subunits
     105904927 (sem1)
DNA repair and recombination proteins [BR:char03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Other HR factors
     105904927 (sem1)
SSDB
Motif
Pfam: DSS1_SEM1
Other DBs
NCBI-GeneID: 105904927
NCBI-ProteinID: XP_012688333
Ensembl: ENSCHAG00000020872
UniProt: A0A6P3W2V8
LinkDB
Position
19:complement(9535664..9537918)
AA seq 70 aa
MSEKKQTVDLGLLEEDDEFEEFPAEDWNGLDEDEDTHVWEDNWDDDNVEDDFSNQLRAEL
EKHGYKMETS
NT seq 213 nt   +upstreamnt  +downstreamnt
atgtcggagaaaaagcaaaccgttgatttggggttgttggaggaggatgatgaatttgag
gagtttcctgctgaggattggaatgggctagacgaggatgaagatactcatgtttgggag
gataactgggatgacgacaacgtagaggatgacttttcaaatcaactcagagctgagctg
gagaagcatggatacaagatggagacgtcatag

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