Clupea harengus (Atlantic herring): 105904962
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Entry
105904962 CDS
T09045
Symbol
vps52
Name
(RefSeq) vacuolar protein sorting-associated protein 52 homolog
KO
K20298
vacuolar protein sorting-associated protein 52
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105904962 (vps52)
Membrane trafficking [BR:
char04131
]
Protein recycling
Others
EARP complex
105904962 (vps52)
Endosome - Golgi transport
Tethering complex
GARP complex
105904962 (vps52)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps52_C
Vps52_CC
Sec3_CC
DUF1664
MscS_porin
DUF4795
CoV_NSP7
DUF5740
Head-tail_con
Cep57_MT_bd
Nup49_C
Exonuc_VII_L
Phage_GPO
ATG16
Rubis-subs-bind
DUF3450
COG6_N
Motif
Other DBs
NCBI-GeneID:
105904962
NCBI-ProteinID:
XP_031441482
Ensembl:
ENSCHAG00000009038
UniProt:
A0A6P8H1A8
LinkDB
All DBs
Position
19:complement(8520783..8530167)
Genome browser
AA seq
723 aa
AA seq
DB search
MAEAVVSGVRADVNSGESSATNAMAYLQDEKPDSDLDPALNLGDLDLTTDEFILDEVDIH
IQANLEDDLVKEALKTGVDLRQYSKQVEAELQRIEQASIKDYIKESQNIASLHNQITACD
SILERMEEMLSNFQSDLSSISSEIQTLQQQSVSMNMRLKNRQAVRSQLSQLVDELVVPGA
MISVILDSPVTEQEFLEQLHELNNKINFAKELSFRETLACSDIQDIVDRLKIKAVTKIRE
FILQKIYSFRKPMTNYQIPQNNLLKFRFFYQFLLANERTVAKEIRDEYVDTMSKIYYSYF
KSYSSRLLKVQYEDVADKDDLMGVEDTAKKGFFSKPSLKSRNTIFTLGQRGAVLSPAELE
GPILIPHTAQRGDVRYPFETLFRSQHFALLDNGCREYLFLSDFFMVAGNSALDLFNCIMG
KTLGMFLKNISTYVSDCYDSIAVFLCIHIILRFKTITAKRNIPSLDKYWEAVLELLWPRF
ELILEMNIQSIRNTDPQKLGVLDTRPHYITRRYAEFSSAIVSINQTFPNERTHTLLAQLQ
VEVENFVLKMAAEFPSRKDQLIFLINNYDMLLSVLMERAADDSKEVEGFQQLLLARNQEF
IEEILSPPFGGMIAFVKESEGLMERGQLDRLKNDEARITQLVRGFSITWKQSVEAMSQDV
MRSFTNFKNGTSIIQGALTQLIQYYHGFHKVLSQPTFRSLAVRSELINLHHLMVEVKKHK
PNF
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcggtggtcagtggggttagggctgatgttaactccggtgaaagctcagca
actaatgcaatggcatatttgcaagatgagaagcctgattcggatttggatcctgccctt
aacctgggtgatttagacttgaccactgatgagtttatcttggacgaagtagacatacac
atccaggccaatcttgaggatgatttggtgaaggaagccctgaaaacaggggttgacctc
aggcagtactcgaagcaagtggaagctgagctccaacgcattgaacaggcctcgattaaa
gactatattaaagaaagccagaacattgcatcgcttcacaaccagataactgcatgtgat
tccatactggagcgtatggaggagatgttgagcaactttcagagcgacctgtcctccatc
agcagtgagatccagacgttgcagcagcagtccgtcagcatgaacatgcgtctgaagaac
aggcaggcggtgcggagccaactcagccagctggtggatgagctagtggtgcccggagcc
atgatctctgtaatactggacagccctgttaccgagcaggagtttttggagcagcttcat
gagctcaacaacaagatcaactttgccaaggagctcagcttcagagagaccctggcctgc
tccgacatccaggacattgtggacagactcaagatcaaggcagtgacaaagatcagagag
ttcatcttgcaaaagatctactcctttaggaagcccatgaccaactaccagatccctcag
aacaacctgctcaagttcaggttcttctatcagttcttgctggctaatgagaggacggtt
gctaaggagatcagagacgagtatgtggacaccatgagcaagatctattacagctacttc
aagtcctacagcagtcgcctcctcaaggtccagtatgaggatgtggcagacaaggatgac
ctcatgggtgtggaggacacagctaagaaaggtttcttctccaagccgtccctgaaaagc
aggaacaccatctttactctgggccagcggggggcagtgttgagccctgcagagctggag
gggcccatcctcatcccgcacactgctcagagaggagacgtcaggtacccctttgagacg
ctgttccgtagccagcactttgccctgttggacaatggttgccgtgagtacctctttctg
tccgacttcttcatggtggctggcaactcggcgctggacctcttcaactgcatcatggga
aaaacactcggcatgtttctgaagaacatatccacctacgtgtctgactgttatgacagc
attgctgtgtttctatgcatccacatcatcctgcgattcaaaaccatcaccgctaagagg
aacatcccctccctggacaagtactgggaggcagtgctggaactgctgtggccgaggttt
gagctcatcctggagatgaatatccagagcatccgcaacactgaccctcagaagctgggc
gtgctggacacaagaccccactatatcacacgacgctatgcggagttctcctccgccatc
gtcagcattaatcagacattccccaatgagcgcacccataccttgctggctcagctccag
gtcgaagtggaaaactttgtcctaaaaatggctgccgagtttccctccagaaaggatcag
ctcatattcctcatcaacaactacgacatgctgctcagtgttctaatggagagggcagct
gatgacagtaaggaggtagagggcttccagcagctcctcttggctagaaaccaggagttc
attgaggagattttgtcacccccctttggtggcatgattgcgtttgtgaaggagagcgag
ggcctgatggaaagaggtcagctggatcggctgaagaatgatgaagcacggatcactcag
ctggtgaggggcttctccatcacctggaagcagtcagtggaggccatgagtcaggatgtc
atgagatccttcaccaactttaaaaatggcaccagcatcattcagggggcgctgactcag
ctcatccagtactaccatggcttccacaaggtcctctctcagcccacgttccgcagcctg
gccgtgcgctccgagctcatcaatctgcaccatctgatggtggaggtgaagaagcacaag
cccaacttctga
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