Clupea harengus (Atlantic herring): 105905246
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Entry
105905246 CDS
T09045
Symbol
nup58
Name
(RefSeq) nucleoporin p58/p45 isoform X1
KO
K14307
nucleoporin p58/p45
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105905246 (nup58)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105905246 (nup58)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
105905246 (nup58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_FG2
PSY3
Siah-Interact_N
Nup49_C
FapA
Leptin
NET2A_C
PBC
GAIN_ADGRA3
JAKMIP_CC3
Motif
Other DBs
NCBI-GeneID:
105905246
NCBI-ProteinID:
XP_012688703
Ensembl:
ENSCHAG00000001818
UniProt:
A0A6P3W3B0
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Position
17:22326843..22338001
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AA seq
601 aa
AA seq
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MSGFSFGSTPMGPTNAGGGFSFGGATSAPAASTAGFAFGGLGGVTATPAAATTTTSASLF
GGGSLFAQKPASGFSFGTPAPGAAAPTTGLTLGAPAASTAPATGFGGFGKPAASAQPFSL
TTTSAPAPATGLNFGSTLTSTAPQTSMPGFSLNLGPTATSSAAPTAGLSLGSSLFSNMAP
LGLGQPTLGLGLTLGGLGGLGGLASSAATTITAAPAASVGLGGVDFSTSSEKKSDKSSGV
SPQDSKALKDENLPPVICQDVENFQKFVKEQKQVQEDISRMSSKAMLKVQDDIKNLKQLL
SVSASGLQRNALAIDKLKMETAQELKNADIALRTQKTPPGLQHENTAPSDYFRGLVEQFE
VQLQQYRQQIEELENHLTTQGSGSHITPQDLSLAMQKLYQTFVALAAQLQTVHENVKILK
HQYLNYRRAFLEDSTDVFESKRAATKKYLSAPRVTTGPAPFSSVPNATAVAMAATLTQQQ
QPAPGTQPALGAGFGTPFASGMGASLGSSGLGAAFGSGPGFGSVATGGSSFGFSSSKPSG
GSLSAGFGSSSTSGFNFSNPGINASAGLTFGVSNAPAAGFGVAAPLLQLKKPPAGNKRGK
R
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtctggattcagttttggatcgaccccgatggggcccactaatgctggcggaggcttt
tcttttggaggcgcaacaagcgcccctgcagcaagcactgctgggttcgcgttcggtggt
cttggcggtgttaccgccacccctgcagctgccacaacaacgacctccgcaagtttattt
ggaggtggtagcctctttgcccagaaaccagctagcggcttttcttttggtacccctgcc
ccaggggctgctgcaccaactactggactcacacttggtgctccagcagcatccactgct
cctgccacaggtttcggcggcttcgggaaaccagctgcctcagcccaacctttttccctg
accaccacctcagccccagccccagccactggtctcaactttggctcaaccctcacatcc
acagccccacagactagcatgccagggttctccctcaacctgggacccacagccaccagc
tctgcagcccccaccgctggcctctcgctcggctccagtctcttctccaacatggccccc
cttggtttggggcagcctaccctcggtctaggtttgaccctgggaggtttgggaggtttg
ggaggtttggcctcttccgctgccaccactattactgctgctcctgcagccagcgtcgga
ctgggtggggtggacttcagcacatcctcagagaagaagagtgataaatcatctggcgtc
agtcctcaggacagcaaggctcttaaggatgagaatctacctccagtcatctgccaggat
gtggagaactttcagaaatttgtgaaggaacagaagcaggtgcaggaggatatcagtagg
atgtcctccaaagccatgctgaaggtgcaggacgacatcaagaacctgaagcagctgctg
tcagtcagtgccagtgggctgcagagaaatgccctggctatcgacaaactcaagatggag
acggcacaggagttaaagaatgctgacattgccttgagaactcagaaaaccccgcctggt
ctccaacacgagaacaccgccccatccgattatttccgaggcctggtggagcagtttgag
gtgcagctgcagcagtaccggcagcagatcgaggagctggagaaccacctcaccacacag
ggcagcggttctcacatcacaccgcaagatctttccttagccatgcagaaactctaccag
acgtttgtggccctagctgctcaactacagacggtgcatgagaatgtgaagatcttgaag
caccagtacctgaactacaggagggcctttctggaagactccactgatgtgtttgagtcc
aagcgtgccgccaccaagaagtatctgagcgccccgcgcgtcaccaccggccctgccccc
ttcagcagcgtccccaatgccacggccgttgccatggctgccacactgacgcagcaacag
cagcctgctccagggacacagccagccctgggggcaggctttgggactcccttcgcctca
ggcatgggcgctagcttgggctcttccggcctcggagcagcgtttggaagcgggcctgga
ttcgggagtgtagccacaggaggctcttcgtttgggttctcctccagcaagccttcagga
ggaagcctaagcgcaggctttggcagctccagcacgtcaggatttaacttcagcaaccct
ggtatcaacgcatctgcaggactgacattcggcgtgtcaaacgcccccgcagcaggattc
ggcgtggctgctcccctcctgcagctgaagaaaccccctgcgggaaacaagcggggcaaa
agataa
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