Clupea harengus (Atlantic herring): 105905591
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Entry
105905591 CDS
T09045
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X3
KO
K08532
RAR-related orphan receptor alpha
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105905591 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
char03310
]
105905591 (roraa)
Transcription factors [BR:
char03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
105905591 (roraa)
Nuclear receptors [BR:
char03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
105905591 (roraa)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
105905591
NCBI-ProteinID:
XP_012689073
Ensembl:
ENSCHAG00000017595
UniProt:
A0A6P3W4J9
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All DBs
Position
3:8863314..9114629
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AA seq
469 aa
AA seq
DB search
MMYFVISAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNC
LIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQAQREHQQQ
PGEAEPLTPTYGGLAANGLTELHDDLGSYMDGHTPDGAKPDSAVSSFYLDIQPSPDQSGL
DINGIKPEPICDFTPGSGFFPYCSFTNGESSPTVSMAELEHLAQNISKSHMETCQYLREE
LQQMTWQTFLQEEMESYQNKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIV
LLKAGSLEVVFVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMH
LSEDEIALFSAFVLMSADRSWLQEKMKVEKLQQKIQLALQHVLQKNHREDGILTKLICKV
STLRALCSRHTEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQAMPVDG
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgatgtattttgtgatttcagctatgaaagctcaaattgaaattattccttgcaagatc
tgtggagacaaatcatcaggcatccattatggggtgataacatgtgagggctgcaagggt
ttcttcaggaggagtcaacagagcaatgcggcgtactcgtgtccccgtcagaagaactgc
ctgattgaccgtaccagtcgtaaccgctgccagcactgcaggctacagaagtgcctggca
gtgggcatgtcacgggacgcggtgaagttcggccgcatgtccaagaagcagcgcgacagc
ctgtacgccgaggtgcagaagcaccggctgcagcaggcgcagcgcgagcaccagcagcag
cccggcgaggccgagccgctcacgcccacctacggcggcctggcggccaacggcctcacc
gagctccacgacgacctcggcagctacatggacggccacaccccggacggtgccaagccc
gattcggccgtcagcagcttctacctggacatccagccctcgcccgaccagtccggcttg
gacatcaacggcatcaagcccgagcccatctgcgacttcacgcccggctcaggcttcttc
ccctactgctcctttaccaacggcgagagttcgcccaccgtctccatggctgagctagaa
cacctggcccagaacatctccaagtcccacatggagacgtgtcagtacctgagagaggaa
ctccagcagatgacctggcagaccttcctgcaggaggagatggagagctaccagaacaag
ccccgagaagtcatgtggcagctgtgcgccatcaagatcacggaggccatccagtacgtg
gtggagttcgccaagcgcatcgacggcttcatggagctgtgtcagaacgaccagatcgtg
cttctcaaagcaggctctctggaggttgtgtttgtccgaatgtgccgtgcctttgactct
cagaacaacacagtctatttcgatggaaagtatgctggcccggatgtgttcaagtcatta
ggctgtgacgatttgatcagctctgtctttgagtttgggaaaaacttgtgttctatgcac
ctgtctgaggacgagatcgccctgttctctgcatttgtgttgatgtcagcagaccggtct
tggcttcaggagaagatgaaggtggagaaactgcaacagaagatccagctggccctgcaa
cacgtcctgcagaagaaccacagagaggatggcatcctgactaagttgatatgcaaagtg
tcgacgctgcgagcgctgtgcagcaggcatacagagaagctgacggctttcaaagcaata
tacccagacattgtgcgcgcccacttcccccccttatacaaggagctgttcgggtcggac
tttgagcaggccatgcccgtggacgggtag
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