Clupea harengus (Atlantic herring): 105905715
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Entry
105905715 CDS
T09045
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105905715 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105905715 (xab2)
03041 Spliceosome [BR:
char03041
]
105905715 (xab2)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105905715 (xab2)
Spliceosome [BR:
char03041
]
Complex B
Other components
Prp19-related factors
105905715 (xab2)
Complex C
105905715 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
ARM_TT21_C
ARM_TT21
TPR_1
NRDE-2
RPN7
Motif
Other DBs
NCBI-GeneID:
105905715
NCBI-ProteinID:
XP_012689203
Ensembl:
ENSCHAG00000021931
UniProt:
A0A6P3W3S8
LinkDB
All DBs
Position
1:complement(30711775..30718904)
Genome browser
AA seq
849 aa
AA seq
DB search
MPSLNGKADVIFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNASKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCISDPSYEEINNCHERALVFMHKMPRIWLDYCQFLVSQSK
ITRSRRSFDRALRALPITQHCRVWPLYLRFARNLPLPETAITVYRRYLKLSPENAEEYID
YLHSVGRLDEAAVRLAAIVNDENFVSKEGKSNYQLWHEMCDLISQNPDKVKSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVVTVRDFTQVFDSYAQFEES
MIAAKMETNSEMGKDEDDDIDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGTPHQIINTYTEAVQTVDPMKATGKPHSLWVSFARFYEDNEQLDDARTIFEKATKVN
YKVVDDLSGVWCEYGEMELRYENYDAALHILRKATAIPARKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQSLDRCPPKFAKTIYLLYAKLEEE
YGLARHAMAVYERATEAVDTGERHQMFNIYIKRAAEIYGVTHTRPIYQKAIEVLPDEHSR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRITATFWQAWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATINANTVSDLAPGQGGVDDMKMLEQRAQQLAAEAEQD
KPKLKEKILFVRSDTSRSELAELTKQVNPDEIDIDDDEDEDEDQDAEPEEVQLEQKTVPS
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccttccttgaacgggaaagccgatgttatatttgaagaagatgacctgccttatgag
gaggagatcatcaggaatccgtactcggtgaagtgctggatgcgctacatcgagttcaaa
cagaatgcctccaaatcagtgctcaacatgatctatgagcgagctttgaaagagctaccg
ggcagttataagctttggtacaactacttgagagaaagaaggaaacaggtgaaggggaaa
tgcatatcagacccatcctatgaggagatcaacaactgtcatgaaagagcattggttttc
atgcacaagatgccaaggatttggctggattactgtcagttcttggtgtctcagtctaag
atcaccaggagtcgccgctcatttgaccgagccctgagagctctgcccatcacccagcac
tgccgtgtctggcccttatacctccgctttgccaggaacctgcccttgcctgagactgcc
attacagtataccgccggtacctcaagctctcacctgagaacgctgaggaatacattgat
tacctgcattcagtcgggcgtctggatgaggcagcggtgcgtctagcagccattgtgaat
gacgagaactttgtttccaaggagggcaaatctaactaccagctgtggcacgagatgtgc
gacctgatctcccagaacccagacaaggtgaagtcgctcaatgtgggtgccatcatccgt
ggaggcctcacacgcttcacagaccagctgggaaagctctggtgctccctggcagattac
tacatccgcagcggccattttgagaaggcaagagacgtgtatgaggaggccattcagacg
gtggtgaccgtgcgtgatttcacccaggtgttcgacagctatgcccagtttgaggagagc
atgattgcagctaagatggagaccaactcagaaatgggaaaggatgaagatgacgacata
gacctggagctgaggctggcccgcttcgagcagctgatcacccgccggccccttctgctc
aacagcgtgctgctgagacagaacccgcacaacgtgcacgaatggcacaagagagtcaaa
ctgtacgagggcacaccccaccagatcatcaacacgtatactgaggctgtgcagacggtg
gaccctatgaaggccacagggaagccacactcgctctgggtctccttcgccaggttctac
gaggacaatgaacaactagatgatgcacggaccatctttgagaaggccaccaaggtgaac
tacaaggtggtggatgatctgtcgggtgtgtggtgtgagtatggcgagatggagttgcgg
tacgagaactacgacgctgcgctgcacatactcaggaaagccacagccattccggcaagg
aaagctgaatactttgatgcatcggagcctgtgcaaaatcgagtgtacaagtctcttaaa
gtttggtcaatgttggctgacctagaggagagtcttggcactttccagtccacaaaggct
gtttatgatcgcatcattgacctgcggatagccacccctcagatcatcattaattatgct
atgttcctggaagagcacaactactttgaagagagcttcaaggcgtacgaacgtggcatt
gctctgttcaggtggcctaatgtatatgacatctggaacacatatctcaccaaattcatc
gatcgctatggaggaaagaagctggagagagcacgagaccttttcgagcaatccttagat
cgctgccctccaaagttcgccaaaaccatatatctgctgtacgcaaagctggaagaggag
tacggccttgcgcgccatgcgatggccgtgtacgagagagccacagaggctgtggatacg
ggcgagcgccatcaaatgttcaacatctacatcaagagagcagccgagatatacggcgtc
acccacaccagacccatttaccagaaggccatagaggtccttccagacgagcactccaga
gatatgtgtctgcgcttcgccgacatggagagcaagctgggcgagattgatcgcgccagg
gccatctattcctactgctcccagatatgcgatcccaggattacggcaaccttctggcag
gcatggaaggagtttgagattcgccatggcaacgaggacaccatccgcgagatgcttagg
atcaagcgaagcgtccaggccacgtacaacacgcaggtcaacttcatgtcctctcagatg
ctcaaggccaccatcaatgcgaacacagtgtccgaccttgccccgggccagggtggagtc
gatgacatgaagatgctggaacagagggcacagcagctggctgcagaggccgagcaagac
aaacccaagctcaaagagaagatcctcttcgtcaggagtgacacatctcgtagcgaactt
gccgaactgaccaaacaggtcaatccagatgagattgacattgatgatgatgaggacgag
gatgaagatcaggacgcagagcccgaagaggtgcagctggagcagaagactgtcccctct
gctgtctttggaggtctgaaggacgactga
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