KEGG   Clupea harengus (Atlantic herring): 105905862
Entry
105905862         CDS       T09045                                 
Symbol
pcdh10b
Name
(RefSeq) protocadherin-10b isoform X1
  KO
K16499  protocadherin delta 2
Organism
char  Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:char00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:char04515]
    105905862 (pcdh10b)
Cell adhesion molecules [BR:char04515]
 Cadherins
  Protocadherins
   105905862 (pcdh10b)
SSDB
Motif
Pfam: Cadherin Cadherin_2 Cadherin_C_2 Cadherin_CELSR2_9th
Other DBs
NCBI-GeneID: 105905862
NCBI-ProteinID: XP_012689366
Ensembl: ENSCHAG00000015532
UniProt: A0A6P3W4J0
LinkDB
Position
20:complement(19721084..19733904)
AA seq 1037 aa
MIVFLLLLCLANGVVSQIRYSVPEEGEHGTFIGNIAEDLSLDLTKLAARRFQTVPSSRTP
YLEVNLETGVLYVNEKIDRERICKQSATCLLHLEVFLENPLELFRIEIEVLDINDNPPEF
PETDITVEISESATPGTRFPLETAFDPDVGSNALRTYDITTNNYFYLDVQTQTDGNKFAE
LVLEKPLDREQQAVHRYVLTAVDGGQPPRTGTALLVVKVLDSNDNVPVFDQPVYSVSLAE
NAPVGTLVIQLNATDVDEGMNGEVVYSFSNHISSRVKELFDIDPRTGRIEVRGDVDFEES
SLYQIYVQAKDMGPNAVPAHCKVLVQVTDLNDNAPEITFSTVTESVSENATPGTVIALLS
VTDKDSEENGQTHVEILGEVPFKLKTSFRNYYTIVTDGPLNRESVDTYTVTVVARDKGSP
SLATSKSIKLQVSDENDNAPAFTQPIYDVYVTENNVPGAYIHAVNAIDPDIGRNAHLNYS
ILECDIQGMSVKTYVSINNESGALYALRSFDYEQLKDFSFTVQATDNGIPELSSNATVNV
IIVDQNDNAPSVIAPLGKNGTAREPLPRSAEPGYLVARIVAMDGDDGENARLSYSIQRGN
ENGMFRMDWRTGELRTARRVSAKRDPQQLYDLLIEVRDHGQPPLSSSASVMVTLVDSVVE
GHNGDRSGTAKAKETSLDLTLILIIALGSVSFIFLLAMIVLAVRCQKDKKLNIYNSCLSG
DCCFLGCSSCCCGRQARAARKKKKLSKSDIMLVQSAHASAATNAAVSVASASQVPVEESG
SFGSLHQSQNYCYQVCLTPESAKTDLMFLKACSPSRSADTEHNPCGAIVTGYTDQPQPDI
ISNGSILSNETKHQRAELSYLVDRPRRVNSSAFQEADIVSSKDSGHGDSEQGDSDHDATH
RGHTSGADLFSNCTEECKALGHSDRCWMPTFVPTDSRQGADYRSNLHVPGMDSVPDTEVF
ESEAQPGDKSFSTFGKETSLHNHLHHNHNHSHHQNNHQYNQHNLHHHGTIDRRELDALLS
NSRAPYKPAYMTRKRIC
NT seq 3114 nt   +upstreamnt  +downstreamnt
atgattgtgtttctgcttctgctgtgtcttgcgaatggcgttgtctctcagatacgttac
tcggtaccggaggagggggagcacggaacgttcattgggaatatcgcggaggacttgagc
ttagacctcacgaaactcgcggctcgcaggtttcagactgtgcccagctcgcggactcct
tacctggaggtaaacctggaaaccggtgtgctttacgtcaatgagaagattgaccgggag
cgcatttgtaaacagagtgccacctgcctcctccaccttgaggtgtttctcgagaaccca
ctcgaactcttccgcatcgagatcgaggtcttggacattaacgacaatcctcctgaattc
ccggagaccgacatcaccgtggagatctccgagagtgcaaccccgggcacccgcttcccg
ctggagactgccttcgacccggacgttggcagtaacgcattacgcacctacgacataacc
acaaacaactatttttacctggacgtacagacgcagaccgatgggaataaattcgctgag
ctggtgctggaaaaacctttggatcgggagcagcaggcagttcacaggtacgtgctgacc
gcagtggatggtggccagccccctcggactggcacagcgctgctggtagtgaaagtacta
gactccaacgacaatgttccggtgtttgatcaacccgtgtattcggttagcctggccgaa
aacgcgccagtgggaacgctggttattcagcttaacgcaactgacgtcgatgagggaatg
aacggagaagttgtgtattctttcagcaatcacatctccagcagggttaaggagctattc
gatatagacccacgcacagggaggatagaagtgcgcggggatgtggatttcgaggagagc
agtctgtaccagatctatgtacaagcaaaggatatgggaccaaacgccgtgcctgcgcac
tgcaaagttctggtgcaagtgacagatctgaatgacaatgcgcctgagatcaccttcagc
acagtcacggagtccgttagcgagaatgctactccgggaacagtaattgcgctgctcagc
gtcacggacaaggactccgaggaaaacggacagactcatgtagagatcctgggcgaagtg
ccatttaagctcaaaacctcgtttaggaactattacactattgtcacggatggcccgttg
aacagagagagcgtagatacctacaccgtaacggtagtggccagagataaaggctctccg
tctcttgccacaagtaaatcgattaaacttcaagtttctgatgaaaatgacaatgcgcca
gcgtttacgcagcccatttatgatgtgtatgtaactgaaaataatgttcccggtgcttac
attcacgcagtgaacgcaatagaccctgatattggtcgaaatgcgcatttaaattactcc
atactggagtgtgacatacagggtatgtcggtcaaaacctacgtgtcaatcaacaacgag
agcggagctctttacgccctcaggtcattcgattatgagcagctcaaagactttagtttt
acagtccaggcaacagacaatggtatccccgagctctcctcaaacgccacagtaaatgtg
attatagtggaccagaacgacaatgccccctctgtaattgcaccactgggcaaaaacggt
acggccagagagcctctaccccgctcagccgagccaggatacctagtcgctcgcatcgtc
gccatggatggagatgatggagaaaacgcacggctgtcttacagcatccagaggggcaat
gaaaacggcatgttccgtatggactggcggaccggagaactaaggactgcacgcagagtg
tctgccaagcgggacccccagcagctgtatgacctgttgatcgaggttagggaccacggt
cagccacctctgtcctccagcgccagtgtgatggtgacgctggtggatagcgtggtggag
ggccacaatggggaccggagcggtacggccaaagcgaaagaaaccagtctggacctgact
cttatcctcatcatcgctctgggctccgtttccttcatcttcctcctcgccatgatcgtg
cttgcagtacgctgtcagaaggacaagaagctcaatatctacaactcgtgcctgtccggc
gactgttgcttcctgggctgcagctcgtgctgctgcggcaggcaggcgcgggccgctcgg
aagaaaaaaaaactgagcaagtcggacatcatgctggtgcagagcgcgcacgccagtgca
gccaccaacgcggccgtcagcgtcgcaagcgcgtcgcaggttcccgtggaagaatccggg
agcttcggctcgctccaccaaagccagaactattgctaccaggtatgtctgacaccggag
tctgccaaaaccgacctcatgttcctcaaggcctgtagtccgtcacggagcgccgacact
gaacacaacccgtgcggagcgatagtaacagggtacactgaccagccgcagcctgacatc
atatccaacggcagcatcttatcaaatgagaccaaacaccagcgtgcggagctcagctac
ctggtggacagaccgaggcgtgtgaacagctcggccttccaggaggcggatatcgtgagc
tcaaaagacagtggccacggggacagcgagcagggagatagtgaccacgacgctacgcat
cgaggacacacttccggcgctgacctcttctcgaactgcacagaagagtgtaaagcactg
ggccactcggaccgatgctggatgcccaccttcgtgcccacggacagtcgccagggcgct
gattaccgtagcaaccttcacgtgccaggcatggactccgtgcccgacactgaggtattt
gagagcgaggcacagccgggggataagtcattctccacctttggcaaagagacgtccctc
cacaaccacctccaccacaaccacaaccacagccaccaccaaaacaaccaccagtacaac
caacacaacctccaccatcatggcaccatagaccggagagagttagatgcacttctgtct
aactcgcgtgcgccttacaaacctgcctatatgacgcggaaaaggatatgctag

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