Clupea harengus (Atlantic herring): 105905862
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Entry
105905862 CDS
T09045
Symbol
pcdh10b
Name
(RefSeq) protocadherin-10b isoform X1
KO
K16499
protocadherin delta 2
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
char04515
]
105905862 (pcdh10b)
Cell adhesion molecules [BR:
char04515
]
Cadherins
Protocadherins
105905862 (pcdh10b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
105905862
NCBI-ProteinID:
XP_012689366
Ensembl:
ENSCHAG00000015532
UniProt:
A0A6P3W4J0
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Position
20:complement(19721084..19733904)
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AA seq
1037 aa
AA seq
DB search
MIVFLLLLCLANGVVSQIRYSVPEEGEHGTFIGNIAEDLSLDLTKLAARRFQTVPSSRTP
YLEVNLETGVLYVNEKIDRERICKQSATCLLHLEVFLENPLELFRIEIEVLDINDNPPEF
PETDITVEISESATPGTRFPLETAFDPDVGSNALRTYDITTNNYFYLDVQTQTDGNKFAE
LVLEKPLDREQQAVHRYVLTAVDGGQPPRTGTALLVVKVLDSNDNVPVFDQPVYSVSLAE
NAPVGTLVIQLNATDVDEGMNGEVVYSFSNHISSRVKELFDIDPRTGRIEVRGDVDFEES
SLYQIYVQAKDMGPNAVPAHCKVLVQVTDLNDNAPEITFSTVTESVSENATPGTVIALLS
VTDKDSEENGQTHVEILGEVPFKLKTSFRNYYTIVTDGPLNRESVDTYTVTVVARDKGSP
SLATSKSIKLQVSDENDNAPAFTQPIYDVYVTENNVPGAYIHAVNAIDPDIGRNAHLNYS
ILECDIQGMSVKTYVSINNESGALYALRSFDYEQLKDFSFTVQATDNGIPELSSNATVNV
IIVDQNDNAPSVIAPLGKNGTAREPLPRSAEPGYLVARIVAMDGDDGENARLSYSIQRGN
ENGMFRMDWRTGELRTARRVSAKRDPQQLYDLLIEVRDHGQPPLSSSASVMVTLVDSVVE
GHNGDRSGTAKAKETSLDLTLILIIALGSVSFIFLLAMIVLAVRCQKDKKLNIYNSCLSG
DCCFLGCSSCCCGRQARAARKKKKLSKSDIMLVQSAHASAATNAAVSVASASQVPVEESG
SFGSLHQSQNYCYQVCLTPESAKTDLMFLKACSPSRSADTEHNPCGAIVTGYTDQPQPDI
ISNGSILSNETKHQRAELSYLVDRPRRVNSSAFQEADIVSSKDSGHGDSEQGDSDHDATH
RGHTSGADLFSNCTEECKALGHSDRCWMPTFVPTDSRQGADYRSNLHVPGMDSVPDTEVF
ESEAQPGDKSFSTFGKETSLHNHLHHNHNHSHHQNNHQYNQHNLHHHGTIDRRELDALLS
NSRAPYKPAYMTRKRIC
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgattgtgtttctgcttctgctgtgtcttgcgaatggcgttgtctctcagatacgttac
tcggtaccggaggagggggagcacggaacgttcattgggaatatcgcggaggacttgagc
ttagacctcacgaaactcgcggctcgcaggtttcagactgtgcccagctcgcggactcct
tacctggaggtaaacctggaaaccggtgtgctttacgtcaatgagaagattgaccgggag
cgcatttgtaaacagagtgccacctgcctcctccaccttgaggtgtttctcgagaaccca
ctcgaactcttccgcatcgagatcgaggtcttggacattaacgacaatcctcctgaattc
ccggagaccgacatcaccgtggagatctccgagagtgcaaccccgggcacccgcttcccg
ctggagactgccttcgacccggacgttggcagtaacgcattacgcacctacgacataacc
acaaacaactatttttacctggacgtacagacgcagaccgatgggaataaattcgctgag
ctggtgctggaaaaacctttggatcgggagcagcaggcagttcacaggtacgtgctgacc
gcagtggatggtggccagccccctcggactggcacagcgctgctggtagtgaaagtacta
gactccaacgacaatgttccggtgtttgatcaacccgtgtattcggttagcctggccgaa
aacgcgccagtgggaacgctggttattcagcttaacgcaactgacgtcgatgagggaatg
aacggagaagttgtgtattctttcagcaatcacatctccagcagggttaaggagctattc
gatatagacccacgcacagggaggatagaagtgcgcggggatgtggatttcgaggagagc
agtctgtaccagatctatgtacaagcaaaggatatgggaccaaacgccgtgcctgcgcac
tgcaaagttctggtgcaagtgacagatctgaatgacaatgcgcctgagatcaccttcagc
acagtcacggagtccgttagcgagaatgctactccgggaacagtaattgcgctgctcagc
gtcacggacaaggactccgaggaaaacggacagactcatgtagagatcctgggcgaagtg
ccatttaagctcaaaacctcgtttaggaactattacactattgtcacggatggcccgttg
aacagagagagcgtagatacctacaccgtaacggtagtggccagagataaaggctctccg
tctcttgccacaagtaaatcgattaaacttcaagtttctgatgaaaatgacaatgcgcca
gcgtttacgcagcccatttatgatgtgtatgtaactgaaaataatgttcccggtgcttac
attcacgcagtgaacgcaatagaccctgatattggtcgaaatgcgcatttaaattactcc
atactggagtgtgacatacagggtatgtcggtcaaaacctacgtgtcaatcaacaacgag
agcggagctctttacgccctcaggtcattcgattatgagcagctcaaagactttagtttt
acagtccaggcaacagacaatggtatccccgagctctcctcaaacgccacagtaaatgtg
attatagtggaccagaacgacaatgccccctctgtaattgcaccactgggcaaaaacggt
acggccagagagcctctaccccgctcagccgagccaggatacctagtcgctcgcatcgtc
gccatggatggagatgatggagaaaacgcacggctgtcttacagcatccagaggggcaat
gaaaacggcatgttccgtatggactggcggaccggagaactaaggactgcacgcagagtg
tctgccaagcgggacccccagcagctgtatgacctgttgatcgaggttagggaccacggt
cagccacctctgtcctccagcgccagtgtgatggtgacgctggtggatagcgtggtggag
ggccacaatggggaccggagcggtacggccaaagcgaaagaaaccagtctggacctgact
cttatcctcatcatcgctctgggctccgtttccttcatcttcctcctcgccatgatcgtg
cttgcagtacgctgtcagaaggacaagaagctcaatatctacaactcgtgcctgtccggc
gactgttgcttcctgggctgcagctcgtgctgctgcggcaggcaggcgcgggccgctcgg
aagaaaaaaaaactgagcaagtcggacatcatgctggtgcagagcgcgcacgccagtgca
gccaccaacgcggccgtcagcgtcgcaagcgcgtcgcaggttcccgtggaagaatccggg
agcttcggctcgctccaccaaagccagaactattgctaccaggtatgtctgacaccggag
tctgccaaaaccgacctcatgttcctcaaggcctgtagtccgtcacggagcgccgacact
gaacacaacccgtgcggagcgatagtaacagggtacactgaccagccgcagcctgacatc
atatccaacggcagcatcttatcaaatgagaccaaacaccagcgtgcggagctcagctac
ctggtggacagaccgaggcgtgtgaacagctcggccttccaggaggcggatatcgtgagc
tcaaaagacagtggccacggggacagcgagcagggagatagtgaccacgacgctacgcat
cgaggacacacttccggcgctgacctcttctcgaactgcacagaagagtgtaaagcactg
ggccactcggaccgatgctggatgcccaccttcgtgcccacggacagtcgccagggcgct
gattaccgtagcaaccttcacgtgccaggcatggactccgtgcccgacactgaggtattt
gagagcgaggcacagccgggggataagtcattctccacctttggcaaagagacgtccctc
cacaaccacctccaccacaaccacaaccacagccaccaccaaaacaaccaccagtacaac
caacacaacctccaccatcatggcaccatagaccggagagagttagatgcacttctgtct
aactcgcgtgcgccttacaaacctgcctatatgacgcggaaaaggatatgctag
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