Clupea harengus (Atlantic herring): 105905937
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Entry
105905937 CDS
T09045
Symbol
usp9
Name
(RefSeq) probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X5
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
char01002
]
105905937 (usp9)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105905937 (usp9)
Enzymes [BR:
char01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
105905937 (usp9)
Peptidases and inhibitors [BR:
char01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
105905937 (usp9)
Ubiquitin system [BR:
char04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
105905937 (usp9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
DUF3517
UCH
UCH_UBL1
UCH_1
FAST_1
Motif
Other DBs
NCBI-GeneID:
105905937
NCBI-ProteinID:
XP_012689456
Ensembl:
ENSCHAG00000022554
UniProt:
A0A6P3W4L3
LinkDB
All DBs
Position
2:22540601..22589769
Genome browser
AA seq
2631 aa
AA seq
DB search
MTATTRGSPVGGNDSQGQGQAPDGQSQPPLPQNQTSSPNSSNENSPVSPPDEQGQGDCPP
QLEEEEPAFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIDLSKKGLDVKCEACQR
FFRDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLVELCVAKLSQDWFPLLELLAMAT
NPHCKFHIYNGTRPSETVPAGVQLAEDELFARPPDPRSPKGWLVDLINKFGTLNGFQILH
DRFMSGQALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPIIEMVPQFLENLTDEELKKEA
KNEAKNDALSMIIKSLKNLASRVPGQEETVKNLEIFRLKMILRLLQISSFNGKMNALNEV
NKVISSVSYYTHRHGNPEEEEWLTAERMAEWIQQNNILSIVLRDSLHQPQYVEKLEKILR
FVIKEKALTLQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFKASWTN
ASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQALSAHIKILDY
SCSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSLFGEAPQNLSQTQRSPHVFY
RHDLINQLQHNHALVTLVAENLSAYMESMRQFSKAEHADFDPQTVRPGSRYSHVQEVQER
LNFLRFLLKDGQLWLCAPQAKQIWKCLAENAVFLCDREACFKWYSKLMGDEPDLDPDINK
DFFENNVLQLDPSLLTENGMKCFERFFKAVNCREGKLVAKRRAYMMDDLELIGLDYLWRV
VIQGSDDIGSRAIDLLKEIYTNLGPKLQVNQVEIHEDFIQSCFDRLKASYDTLCVLDGDK
DSINCARQEAIRMVRVLTVLREYITECDSDYHEERTILPMSRAFRGKHITLIVRFPNQGR
QVDDLDIWSHTNDTIGSVRRSILNRIKANSTHTKIELYIGGEMVDPNDDRKLIGQLNLKD
KTLITAKLTQVSANMPSSPDSSSDSSTGSPGNHGNHYSEGPNPEVESCLPGVIMSLHLRY
ISFLWQVADLGCNLNMPLLRDGARVLMKLMPPDNTTMENLRAICLDHAKLGENSLSPTLD
SRFFGPSPSQVLYLIEVVYALLMPASHTLGEDASDFQYNFLKSGGLPLVLSMLTRNNFLP
NADMETRRGAYLNALKIAKLLLTAVGFGHVKAVAEACQPVVEGTMPVSPINQATHDQALV
LQNALQNIPNPSAECMLRNVAIRLAQQISDENFFQASKYFPDICVIRAIQKIVWASGCGT
VQLVFSSNEEISKIYEKTNAGNEPDAEDEQVCCEALEVMTLCFALTPTALDALSKEKAWQ
TFIIDLLLHCQSKSVRQMAQEQFFLMATRCCMGHRPLLFFITLLFTVLGSTAKERAKHAG
DYFTLLRHLLNYAYNSNINLPNAEVLLNNEIDWLKRIRDEVKRTGETGVEETILEGHLGV
TKELLAFQTPEKKYYIGCEKGGANLIKELIDDFIFPASNVYLQYMKSGEFPTEQAIPVCS
SPATINAGFELLVALAVGCVRNLKQIVDTLTEMYYLGCEALTEWEYLPPVGPRPTKGFVG
LKNAGATCYMNSVIQQLYMIPPIRNGILAIEGTGSDVDDDMSGDEKQDNESNVDPRDEVF
SYHHQFDDKPSLSKAEDRKEYNIGVLRHLQVIFGHLAASRLQYYVPRGFWKQFRLWGEPV
NLREQHDALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQKICQGCPHRYECEESFT
TLNVDIRNHQNLLDSMEQYVKGDLLEGANAYHCEKCNKKVDTVKRLLIKKLPPVLAIQLK
RFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGSSDSSPESQTPRADDPKENPQ
LPPESPPPPETPPPPATDPQSPSSRYRLVGVLVHSGQASGGHYYSYVIHRGEGGMGAGGV
AGGAGDGERNRWYKFDDGEVTECKMDDDEEMKNQCFGGEYMGEVFDHMMKRMSYRRQKRW
WNAYILFYERMDTPDRDGELVKYIQELTLGSKPNQIKMPGAIECSVRKQNVQFMHNRMQY
SLEYFQFMKKLLTCNSVYLNPPPGQDHLLPEAEEIAMISIQLAARFLFSTGFHTKKIVRG
PASDWYDALCILLRHSKNVRYWFAHNVLFAYPNRFSEYLLECPSAEVRGAFAKLIVFIAH
FSLQDGPCPSPIASPGPSSQACDNLSLSDHLLRAVLNLLRREVSEHGRHLQQYFNLFVMY
ANLGLAEKTQLLKLGVPATFMLVALDEGPGPPIKYQYAELGKLFTVVSQLVRCCDVASRM
QSSINGEGNPALPNPYGDPNLTQPIMPLQQLVAEILFVRTSYVKKIIEDCSNSEETIKLL
RFCCWENPQFSSTVLSELLWQVAYSYTYELRPYLDLLLQILLIEDSWQTHRIHNVLKGIP
DDRDGLFDTIQRSKNHYQKRAYQCIKCMVALFSNCSVAYQILQSNGDLKRKWTWAVEWLG
DELERRPYTGNAQYTYNNWSPPVQSNETSNGYFLERSHSARMTLAKACELCPEECHLTKH
EAVSEEDAARKPSSPQQLMPGEVAVQPQHTEPDDQEAPEEQDSSPPEDTSLYPHSPGTQY
QQQQNNHPHGQPYTGPAAQHMNNPQRPGPRAQENWEPTEEVPPPAQTTTKE
NT seq
7896 nt
NT seq
+upstream
nt +downstream
nt
atgacggccacgacgcgtggctctccggtggggggcaacgacagtcagggccagggccag
gcccccgacggccagtcccagcccccgctgccccagaaccagacgtcctctcctaactcc
tccaatgagaactctccagtgagccctcccgatgagcagggccagggggactgccctccc
cagctggaggaggaggagccagctttcccccacactgacttggccaagctggatgacatg
atcaacagaccccgctgggttgttccagttctgccaaagggtgaattagaagttcttctt
gaagctgctatagatcttagtaaaaaaggacttgatgtcaagtgcgaagcgtgccagagg
tttttccgagacggcttgactatctccttcaccaagatactgacagatgaggccgtcagt
ggatggaagtttgagatccacaggtgcatcatcaacaacacccatcgtctggtggagctg
tgcgtggccaagctctctcaggactggttccccctccttgagctgctggccatggccacc
aacccgcactgcaagttccacatctacaacggcacgcggccctccgagacggtgcctgct
ggagtgcagcttgccgaggacgagctcttcgcccgcccacccgaccctcgctctcccaag
ggctggctagtggatttaataaacaaatttggcacattaaacgggttccagattctgcat
gatcgcttcatgagcggccaggctctgaatgtgcagatcatcgctgcactcatcaagcct
ttcgggcagtgctatgaatttctcactttgcacacggtgaagaagtacttcctccccatc
atagaaatggtcccccagtttctagaaaacctcacagacgaggagctgaagaaggaggcc
aagaatgaagccaaaaacgacgccctgtccatgatcatcaagtcactcaagaacctggcg
tcacgggtaccaggccaggaggagactgtgaagaacttagaaatttttaggttaaaaatg
attcttaggttattgcaaatatcttcttttaatggcaaaatgaatgcactaaatgaagta
aacaaggtgatctccagcgtgtcctactacactcaccggcatggcaacccagaggaggag
gagtggctgaccgctgaacgcatggcggagtggattcagcagaacaacatcctgtccatc
gtgctgcgggacagcctgcaccagccccagtacgtggagaaactggagaagatcctgcgc
ttcgtcatcaaggagaaggccctcaccctgcaggacctggacaacatctgggccgctcag
gccggaaagcacgaggctattgtgaaaaatgtccatgatctcctagcaaagctggcatgg
gacttctctcccgagcagctggatcatctctttgactgtttcaaggcgagctggaccaat
gcaagcaaaaagcagcgggagaagcttctggaactcatccgcaggctggcggaggacgac
aaggatggcgtgatggcccacaaggtgctgaacctactgtggaatctggcgcacagcgat
gacgtgcccgtggacatcatggaccaggccctaagtgcccatatcaagatcctggactac
agctgctctcaggaccgcgacacccagaagatccaatggatcgaccgcttcattgaagag
ttgcgcaccaacgataagtgggtgatacccgccctgaagcagatccgcgagatatgtagc
ctgttcggagaagcccctcagaacctgagtcaaacccagaggagtcctcacgtgttctat
cggcatgacctgatcaaccagttgcagcacaaccacgcgctggtcaccctggtggcagag
aacctgtctgcctacatggagagcatgaggcagttctccaaagccgaacacgctgacttt
gacccgcagacagtgaggccaggaagccgatacagccatgtgcaggaggtccaggagagg
ctcaacttcttgaggttcctgctaaaagatggccagctgtggctgtgcgcccctcaggcc
aagcagatctggaagtgcctggcagagaacgctgtgttcctgtgcgaccgcgaggcctgc
ttcaagtggtactccaagctgatgggcgacgagcccgacctggacccggacatcaacaag
gacttcttcgagaacaacgtgctgcagctggacccctcgctgctgaccgagaacggcatg
aagtgctttgagcgcttcttcaaggccgtcaactgccgcgagggcaagctggtggccaag
cgccgcgcctacatgatggacgacctggagctgatcggccttgactacctctggagggtt
gtgattcaaggaagtgatgacatcggcagccgtgcaatagatttgctcaaggagatctac
acaaacctcggaccaaaattgcaagtcaatcaggttgagatccatgaggatttcatccag
tcgtgttttgaccgactgaaggcatcgtatgacaccctgtgcgtgctggacggggacaag
gacagcattaactgcgcccgacaggaggctatccgcatggtgagggtgctgaccgtcctg
agggagtacatcaccgagtgtgacagcgactaccacgaggaacgcaccatcctgcccatg
tccagagcattccggggcaagcacatcacactgatcgtgcggttccccaaccaaggccgg
caggtggacgacctggacatctggtcgcacaccaacgacaccatcggctcggtgcggcgc
agcatcctcaaccgcatcaaggccaacagcacgcacaccaagatcgagctctacattggc
ggagagatggtggaccccaacgacgaccgcaagttgattggccagctcaacctcaaggat
aaaacgctgatcacggccaagctcacgcaggtcagcgccaacatgccctccagcccggac
agctcctcagactcctccaccggctcgcccggaaaccacggcaaccactacagcgaaggg
cccaaccccgaggtggagagctgcctgcctggagtgatcatgtcgctgcacctgcgctac
atctcgttcctgtggcaggtggccgatctgggctgcaacctcaacatgcctctcctgcgt
gacggcgcccgcgtcctcatgaagctcatgcccccagataacactacaatggaaaacctg
cgagcaatctgcctggatcatgccaaactgggagagaacagccttagtcccaccctcgac
tcccgcttctttggcccgtcaccgtctcaagtgctctacttgatagaggtggtctacgcc
ttgctaatgccggccagtcacacgctgggtgaggacgccagcgacttccagtacaacttc
ctgaagagcggcggcctgccactggtgctcagcatgctcacccgcaacaacttcctgcca
aacgctgacatggagacgcggcggggcgcctacctcaacgccctcaagatcgccaaactc
ctgctcaccgccgtcggcttcggccacgtcaaggctgtcgccgaggcctgccagcccgtg
gtggaggggaccatgcccgtctcgccaattaaccaggccacccacgaccaagcactggtg
ctgcagaacgccctgcagaacatccccaacccctcggccgagtgtatgctgcgcaacgtg
gctattcgcctcgcgcagcagatttctgacgagaacttcttccaggcttcgaagtacttc
ccagacatctgtgtcattcgggccatacagaagatcgtctgggcctcgggctgtggcact
gtgcaactggtcttcagctctaatgaagagatcagcaagatttatgagaagacaaatgca
gggaatgagccggatgcagaggacgagcaggtgtgctgcgaggcgctggaggtcatgacc
ctgtgctttgccctcacgcccaccgccctagatgctctgagcaaggagaaggcctggcag
accttcatcatagacctgctgctgcactgccagagcaagtctgtgcgtcagatggcgcag
gagcagttcttcctcatggccaccaggtgctgcatgggtcaccggccactccttttcttc
atcaccctcctcttcaccgttctaggaagcactgcaaaagaacgtgccaagcacgccgga
gattacttcacccttctaaggcacttactcaactacgcatacaacagcaacatcaacctc
cccaacgcagaggtcctcctcaacaacgagatcgactggctcaagagaatcagggacgag
gtgaagagaactggggagacgggcgtggaggagaccattctggagggccacctgggcgtc
accaaggagctgctggccttccagaccccagagaagaagtactacattggctgcgagaag
ggcggtgccaacctcatcaaggagctgatagatgacttcatcttcccggcctctaacgtg
tacctgcagtacatgaagagtggggagttccccacggagcaggccatccccgtgtgcagc
agccccgccaccatcaacgccggcttcgagctgctggtggccctggccgtgggctgcgtg
cgcaacctcaagcagattgtggacacgctcacggaaatgtattacttgggttgtgaagca
cttactgaatgggagtacttaccgccagtggggcctcggcccactaaaggctttgtgggg
ctgaagaatgccggggcaacgtgctacatgaactccgttatccagcagctttacatgatc
ccgcccatcaggaacggcatcctggccatcgagggcactggcagcgacgtggatgacgac
atgtccggagacgagaagcaggacaacgagagcaacgtggacccacgggacgaggtgttc
agctaccaccaccagtttgacgacaagccgtccctcagcaaggcagaggaccggaaggag
tacaacatcggcgtcctgcgtcacctgcaggtcatcttcggccacctggctgcctcccga
ctccagtactatgtgccccgagggttctggaaacagttcaggttatggggtgagccggtg
aacctgcgggagcagcacgatgcactggagttcttcaactcgctggtggacagcctggac
gaagcgctcaaggccctgggccacccggccatgctcagcaaagtcctgggaggctctttt
gccgaccagaagatctgccagggctgtcctcacagatatgaatgtgaggagtcgttcaca
acactgaatgtagacatcagaaaccaccagaacctcctggactctatggagcagtatgtt
aaaggggacctgctggagggtgccaacgcctatcactgtgagaagtgcaacaagaaggtg
gacacggtgaagcgtctgcttatcaagaagctgccgccggtgctggccatccagctgaag
cgattcgactacgactgggagcgtgagtgcgccatcaagttcaacgactactttgagttc
ccacgcgagctggacatggagccctacacggtggccggcgtggccaagctggagggctcg
tccgactccagccccgagagccagacgccacgcgccgacgaccctaaagagaacccccag
cttcccccagagtccccgccgccgcccgagaccccaccgccccccgccaccgacccccag
tccccgagctcgcgctaccgcctcgtcggcgtgctggtgcactcgggccaggccagcggc
ggccattactactcctacgtcatccaccggggcgaggggggcatgggcgccggtggcgtc
gcaggaggcgcgggcgacggcgagcgcaaccgctggtacaagttcgacgacggcgaggtg
accgagtgcaagatggacgacgacgaagagatgaagaaccagtgcttcggcggagagtac
atgggcgaagtgttcgaccacatgatgaagcgcatgtcctaccgccggcagaagcgctgg
tggaacgcctacatcctcttctacgagcgcatggacacgcccgaccgcgacggcgagctg
gtcaagtacatccaggagctgaccctcggcagcaagcccaaccagatcaagatgcccggc
gccatcgagtgcagcgtgcgcaagcagaacgtccagttcatgcacaaccgcatgcagtac
agcctggagtacttccagttcatgaagaagctcctgacgtgcaacagcgtctacctgaac
cctccgccaggacaagatcatcttttgcccgaagcagaggagatagcaatgatcagcatt
cagctcgctgccagattcctcttcagcacagggttccacaccaagaagatagtgagaggc
ccagccagtgactggtatgatgccctctgcatcctgctgaggcacagtaagaatgtacgc
tactggtttgcacacaacgtcctcttcgcctaccccaaccgcttctccgagtacctgctg
gagtgccccagcgcagaggtgcgcggggccttcgccaagctcatagtatttattgcgcac
ttctccctgcaagacggaccgtgcccctcaccaattgcctctccaggaccctcaagtcag
gcctgtgataacctgagcctaagtgaccacctgttgcgtgccgttctcaacctgctccgg
agagaggtatccgaacacggccgtcacctgcagcagtacttcaacctgttcgtcatgtac
gccaacctgggccttgcagaaaagacccagctgttgaagctcggtgtgccagccaccttc
atgctggtggccttggatgagggtcccggcccccccattaagtaccagtacgctgagctg
ggcaagctcttcactgtggtgtctcagctggtgcgctgctgtgatgtggcgtcacgcatg
cagtcctctattaatggtgagggtaaccctgctctgccgaacccttacggcgaccccaac
ctgacgcagcccatcatgccgctccagcagctggtggcggagatcctgtttgtgcgcacc
agctacgtgaagaagatcatcgaggactgcagcaactcggaggagaccatcaagctgctg
cgcttctgctgctgggagaacccgcagttctcgtccaccgtgctcagcgagctgctctgg
caggtggcttactcctacacctatgagcttagaccttacctggacctgctgttgcagatc
cttcttatcgaggattcctggcagacccatagaattcacaatgttttgaaggggatccct
gatgaccgggatgggctcttcgacaccatccagcgctccaagaaccactaccagaagaga
gcttaccagtgcatcaaatgcatggtggcgctgttcagcaactgctctgtggcctatcag
attctccagagtaacggtgacctaaagaggaagtggacatgggcggtggagtggctgggt
gacgagctggagcgccggccgtacacgggcaatgcccagtacacctacaataactggtcc
ccgcccgtccagagcaacgagacctccaacggctacttcctggagcgctcgcacagcgcc
cgcatgactctggccaaggcctgtgagctctgccccgaggagtgccacttaacgaagcac
gaggctgtgtcggaggaggacgctgcccggaagccgtcctcgcctcagcagcttatgcca
ggggaggtggcagtccaaccgcagcacactgagccggacgaccaggaagcccctgaagag
caggactcctctcccccagaagacacctccctgtaccctcactctccagggacccagtat
cagcagcagcagaacaaccacccccacgggcagccctacacgggcccggcggcgcagcat
atgaacaacccccagcgcccgggcccacgagcacaagagaactgggagcccaccgaggag
gtgccccccccggcccagaccaccaccaaggagtag
DBGET
integrated database retrieval system
