Clupea harengus (Atlantic herring): 105905941
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Entry
105905941 CDS
T09045
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X3
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
105905941 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105905941 (ddx3xa)
03041 Spliceosome [BR:
char03041
]
105905941 (ddx3xa)
03036 Chromosome and associated proteins [BR:
char03036
]
105905941 (ddx3xa)
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105905941 (ddx3xa)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105905941 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
105905941 (ddx3xa)
Spliceosome [BR:
char03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
105905941 (ddx3xa)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
105905941 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
105905941
NCBI-ProteinID:
XP_012689469
Ensembl:
ENSCHAG00000025254
UniProt:
A0A6P3W452
LinkDB
All DBs
Position
2:22602373..22624082
Genome browser
AA seq
733 aa
AA seq
DB search
MSHVVIDNSHGLEQQLAVLDLNSADIQGIGTGRRYIPPHLRNKEASKNGCSRFQYQEISY
YHSYRGGWPERCDSPGWDGGRSNGFVNGYHDNRMNGDRNNFGRGPPRNDRGGRGGFRGNR
GGTFQQPMHNAVPYGYENKDAGWNAGVNREAYSNFGARTDTRGKSAFFNDRGTGSRGRYD
RGGFSAGGNSRWAEESRDEEDWSKPTAPNERVENELFAASNTGINFEKYDDIPVEATGNN
SPPHIESFHDVDMGEIIMGNIALSRYTRPTPVQKYAIPIIKNKRDLMACAQTGSGKTAAF
LLPILSQIYTEGPGEALQATKNSGQENGKYGRRKQFPLALVLAPTRELALQIYDESRKFA
YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCIYLVLDEAD
RMLDMGFEPQIRRIVEQDTMPPKGIRHTMMFSATFPKEIQILARDFLEEYIFLAVGRVGS
TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTS
IHGDRSQRDREEALSQFRSGRCPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIG
RTGRVGNLGLATSFYNDKNSNITKDLLDILVESKQEVPSWLESLAYEHQHKSTSRGRSKG
RFSGGFGARDYRQMPGGAQAFGNRGARTAGGHGGNRGFGGNKGGFGSFGNDGYGGSYGGS
YGGNYNQVDWWGN
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcatcgacaattcacacggtctagaacagcagcttgctgtcctagac
ttgaactctgcagacatacagggtattggcacaggcaggcgttacattccgcctcacttg
agaaataaagaggcttctaaaaatggttgctcaagattccaataccaggagatttcctat
tatcacagctacaggggtggctggcccgagagatgtgattcccctggatgggatggtggg
cgtagcaacggctttgtgaatggttaccatgacaaccggatgaatggcgatcgcaacaac
tttgggcgtggccctcctcgcaacgacaggggtgggcgtgggggattccgcggaaaccgt
ggcggcaccttccaacagcccatgcacaatgcagtaccatatggatatgaaaacaaagat
gccggctggaacgctggggtcaacagggaggcttacagcaacttcggagcacgcactgac
acacgcggcaaatcagctttcttcaacgatagaggcactggatccagaggaaggtacgac
cgtggaggcttcagcgctggagggaatagccgctgggcggaggagtccagagatgaggag
gactggtccaagcccaccgcccccaacgagcgtgtggaaaatgagctgttcgctgccagc
aacacaggaattaactttgagaagtatgacgacatccccgtggaagccactggcaacaac
tcccctcctcacattgagagcttccatgacgtggacatgggggagatcatcatgggcaac
atcgccctgagccgctacacccggcccacccctgtgcagaagtatgccatccccatcatc
aagaacaagagagacctgatggcctgcgctcagaccggctctgggaagactgctgccttc
ctgctgcccatccttagccagatctacaccgagggccctggagaggccttacaggctacc
aagaacagcggccaggagaacgggaaatatggccgccgtaagcagttccccctcgccctg
gtgctggccccaacccgtgagctggcccttcagatctacgacgagtctcgcaagtttgcc
taccgctcccgtgtgcgcccgtgcgtggtgtacggaggcgctgacatcgggcagcagatc
cgagacctggagcgaggctgccacctcctggtggccacacccggacgcctggtggacatg
atggagagaggcaagatcggcctggacttctgcatctacctggtcctggacgaggctgac
cgcatgctcgacatgggcttcgagccccagatccgccgcatcgtggagcaggacaccatg
cccccgaaaggcatccgccacaccatgatgttcagcgccaccttccccaaggagatccag
atcctggcccgtgacttcctggaggagtacatcttcctggctgtgggccgcgtgggctcc
acctctgagaacatcacccagaaggtggtgtgggtggaggaaagcgacaagcgctccttc
ctgctggatctgctcaatgccacaggcaaggactcgctcacactggtgtttgtggagacc
aagaaaggggccgatgccctggaggacttcctgtaccgcgagggctacgcctgcaccagt
atccacggcgaccgttcccagagagaccgcgaggaagctctgagccagttccgctcaggc
cgttgccctatcatggttgccactgcagtggctgcccgtggactggacatctccaatgtg
aagcacgtcatcaactttgacctgcccagtgacattgaggagtatgtccaccgcattggg
cgtaccggccgtgtgggaaacctcggtctggccacatccttctacaatgacaagaacagc
aacatcactaaggacttgctggacatcctggtggagtccaaacaggaagtgccgtcctgg
ctggagagccttgcctacgagcaccagcacaagagcaccagccgtggacgctccaagggt
aggttctctggtggatttggagccagagactaccgacagatgcccggaggtgcacaggcc
tttggcaatcgtggtgcccgtactgcgggtggccatggaggaaaccgcggctttggtgga
aataaaggtggcttcggaagctttggcaacgatggctatggtgggagctacgggggcagt
tatgggggcaactacaaccaggtggactggtggggcaactag
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