Clupea harengus (Atlantic herring): 105905943
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Entry
105905943 CDS
T09045
Symbol
tbc1d4
Name
(RefSeq) TBC1 domain family member 4 isoform X1
KO
K17902
TBC1 domain family member 4
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
105905943 (tbc1d4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105905943 (tbc1d4)
Membrane trafficking [BR:
char04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
105905943 (tbc1d4)
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
105905943 (tbc1d4)
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Rab associated proteins
105905943 (tbc1d4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RabGAP-TBC
RabGap-TBC_2
TBC1D_hel
DUF3350
PID
PTB
Cac1_C
DUF4249
Motif
Other DBs
NCBI-GeneID:
105905943
NCBI-ProteinID:
XP_012689475
Ensembl:
ENSCHAG00000015239
UniProt:
A0A6P3W666
LinkDB
All DBs
Position
2:21089517..21125364
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AA seq
1259 aa
AA seq
DB search
MEGQDDKGNNLSKPDKRFSLWYMGWSSLDRRTTLPMLPWLVAEIRRKSEKNESGPGQARE
VILTLMPPLIRCVPANSNNASVFIFEHKAQYISRFIHNSHDLTYFAYLIRSQPDNPESEM
ACHVFKACDPNQVPGVISSIRQVSKVALKGDTKPKQDGYDESFYNSQKFEVLYRGKVMVA
QKKAPPTLVDDCIDKFRQHEVDRKRLRLLNGQRGSTENAPVEFIVGGDDPQAASLSESPE
ADCVVEEEEAQEEEVVVSDPLGGGAVFGLSSSASVGSMRNAFPECILEDSGFGEQEGPRE
VRVRCNSMAGSLQRKSREAAMKAATGRRRHASAPNHVQPSDADKNRTMLFQVGRFEVNLI
SPDSKTVVLEKNFKDISSCSQGIKQNDHFGLICREQGESGPSQYLCYVFQCASDSLVDEV
MLTVKQAFSTAAALRNDKTQVKLCEACPMHDLHKLCERIEGLYPPRAKLAIQKYLSELLD
NEQVDIFERVQRMKPGSDQEENELVILHLRQLCENKQKSHVHIGEAPQNAPSSSAAADSS
SMGRSKLDLLKNKARTSLTSSLENIFSRGANRMRGRLGSMGNMSSFERQDESPGHSPPGT
PPSYLDDDPEAPPFRRRAHTFSHPPVKKKISFTDSQAPKAPLRRQQSLAPELLQSSPVFI
PRKRSVSESESTFSLPPSFSTPSFLKSFYQGSLGSLGSFSDLGTLKSNGEGRKRTLSGCS
NDSLITLTHTPRRVSWRQKIFLSVASPLNKPQGSIHGPDMDARDLLPLSPRALQQDPLSR
MLSPDQEPSTGESGSRSPAEYRSLWRKAIHQQILLLRMEKENQRLEEASRDELHIRKMKL
DYQEVGQDSKDIQAFWEKKMSVPCRAKVQWDKEELQTFLSQGVPKSRRGEVWLALCQQHR
LKQRLPSRQQPPDTPYQDLLKQLTTQQHAILVDLGRTFPTHSYFSTQLGAGQLSLYNLLK
AYSLLDTEVGYCQGISFVAGVLLLHMSEEQAFDMLKFLMYDLGFRRQYRPDMISLQIQMY
QLSRLLHDYHRELYNHLEEQEICPSLYAAPWFLTLFASQFPLGFVARILDLLFVQGTEVI
FKVALCLLSSHEGEIVECDSFETIVDYLKTSLPSLSQAQMEHTISKISEMDISKQLHAYE
VEYHVLQDEMVDAPTPSEDSDRLDKLEKSNVQLKKQNMDLLEKLQAARVKIQSLEVNMEN
FLSRESKMKHLIRSLEQEKASHQKTIERMRSSLPADATADVELTHIKPNGKAKAPGKKP
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtcaggatgacaaagggaataatctgtcgaagccagataagaggttttcgctc
tggtacatggggtggtcttcccttgacagaaggactacgcttcctatgctaccatggctg
gtggctgaaatccggaggaaaagtgagaagaacgaatcgggtcccggacaagccagagaa
gttattttgactctcatgccacctcttatccgatgtgtgcctgcaaacagcaacaacgcc
tctgtgtttatattcgagcacaaagcgcagtatatatcacggttcatccacaacagccat
gacctcacctactttgcttaccttatccggagtcagcccgacaaccccgagtctgagatg
gcatgccatgtcttcaaggcttgtgacccaaaccaggttcctggggtgatcagcagcatc
aggcaggtgtctaaggtggccttgaaaggggacaccaagcccaaacaagatggctacgac
gagtccttctacaactcacagaaatttgaggtgctttaccgcggcaaggtcatggtggcg
cagaaaaaggcgccccccacgctggtggacgactgcatcgacaagttccgccagcacgag
gtggaccgcaagcgactgcgtctgctcaacggccagcgcggctccacagagaacgccccc
gtggagttcatcgtcgggggcgacgacccccaggccgcctccttaagcgagagcccggag
gccgactgcgtggtggaggaggaggaggcgcaggaggaggaggtggtggtcagtgacccc
ctgggcgggggtgcagtttttgggctgagcagcagcgctagcgtgggcagcatgcgcaac
gccttccccgagtgcatcctggaggactccggctttggggagcaggagggccccagggag
gtgcgtgtgcgctgcaacagcatggcggggagcctgcagaggaagtcccgtgaagcggcc
atgaaggcggccacggggcgccggcgccacgctagcgcgcccaatcacgtgcagccgtcc
gacgccgacaagaaccgcaccatgctcttccaggtcggccgctttgaggtaaacctcatc
agtccagacagcaagacggttgtgctggagaagaacttcaaagacatttcctcttgctct
cagggtatcaaacagaacgatcattttggcctcatctgtcgcgagcaaggggagtctggt
cccagccagtacttgtgctacgtcttccagtgcgccagcgactctctggtggatgaggtg
atgttgacggtgaaacaggccttcagtacagcggccgctctgcggaatgataagacgcag
gtcaaactttgcgaggcctgccccatgcacgacctgcacaagctctgcgagaggatagag
ggtctgtacccaccgcgggcgaagctggccatccagaagtatctctccgagctcttggat
aatgagcaggtggacatttttgagcgcgttcagaggatgaagccgggttcagatcaggag
gagaatgagctggtgattctgcatctgagacagctgtgtgagaacaagcagaaatcccat
gtccacattggagaggcccctcagaatgcgccaagcagcagtgcagccgcagacagctcc
tccatgggccgctccaaactggacctcctgaagaacaaggcccgcacctccctgaccagc
tccctggagaacatcttctcccggggggccaaccgcatgcgtggccggctggggagcatg
ggcaacatgagcagcttcgagcggcaggacgagtctcccggacactcccctccaggaacg
ccgcctagttaccttgacgacgaccctgaggctccacccttccgtcgccgtgcccacact
tttagccaccctcccgtcaagaagaagatctccttcaccgactcccaggcccccaaggct
cctctccgccggcagcagtccttagccccggagctcctccagagcagcccggtgttcatc
cccagaaagcgcagtgtgtcagagagcgagtccaccttcagcctccctccttccttctcc
actcccagtttcctgaaaagtttttaccagggctcgttgggctctctcgggtccttctcc
gacctcgggaccctcaagagtaatggagagggccggaagaggaccctgtcaggctgcagc
aatgactccctgattacgctcacacacaccccgcgcagagtgtcctggcgtcaaaagatc
ttcctgagtgtggcttcgcccctcaacaaaccccagggctccattcacggcccagatatg
gacgcccgggacctgcttcctctgtccccccgtgccttacagcaggaccccctgtcccgc
atgctgtccccagaccaggagccctccacaggggagagcgggagccgaagcccagctgag
tacaggtccctgtggaggaaagccatccaccagcagatcctgctgctacggatggagaag
gagaaccagcgcctggaggaagccagcagagatgagctgcacattcgcaagatgaaactg
gactaccaggaagtgggccaagactccaaggacatccaggccttctgggagaagaagatg
agcgtcccctgcagggccaaggtccagtgggacaaggaggagctccagacgttcctcagc
cagggcgtccctaagagccgccgtggtgaggtgtggctggccctgtgccagcagcaccgc
ctgaaacaacgcctcccgtcccgccagcagcccccggacacgccctaccaggacctgctc
aagcagctcaccacccagcagcacgccatcctcgtcgacctgggccggaccttccctacg
cactcatacttcagcacgcagttgggtgcaggccagctgtccctgtacaacctgctgaag
gcctactccctgctggacacggaggtgggctactgccagggcatcagcttcgtggccggg
gtgctactgctgcacatgagcgaggagcaggccttcgacatgctcaagttcctcatgtac
gacctgggcttccgtcgacagtaccgtcccgacatgatctcactgcagattcagatgtac
cagttgtcgcggctgctgcatgactaccaccgggaactctacaaccacctggaggagcag
gagatctgccccagcctgtacgccgcgccctggttcctcacgctcttcgcctcccagttc
cccctcggcttcgtcgcccgtatcctcgacctgctgtttgtgcagggtacagaggtgatc
tttaaggtggctctgtgtctgctgagcagtcacgagggggagatcgtggagtgcgatagc
ttcgagaccatcgtggactacctgaagaccagcctgccctccctcagccaggcccagatg
gagcacaccatctccaaaatatctgagatggacatctctaagcagctgcatgcgtatgag
gtggagtaccacgtcctgcaggatgagatggtggacgcccccacaccctcagaggactct
gaccggctggacaagctggaaaagtccaatgtccagctcaagaaacagaacatggacctg
ctagagaaactccaggcggcgcgggtgaagatccagagcctggaagtgaacatggagaac
tttctgtcccgcgagagcaagatgaagcacctgattcgctcgctggagcaggagaaggcg
tcccaccagaagaccatcgagcgcatgcgcagcagcctgcccgccgacgccaccgccgac
gtggagctgacccacatcaagcccaacggcaaagccaaggccccaggcaagaagccgtga
DBGET
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